Analysis of interatomic Contacts of Structural Units in PDB entry:
6KJ6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6KJ6 entry

There are 3 chains in PDB entry 6KJ6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 8	ARG 235
B	THR 6	VAL 232
C	VAL 2	LEU 1002

There are112 helices in PDB entry 6KJ6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	35	41	Right-handed alpha
Helix 2	AA2	A	80	85	Right-handed alpha
Helix 3	AA3	A	212	217	Right-handed alpha
Helix 4	AA4	A	221	227	Right-handed alpha
Helix 5	AA5	B	36	45	Right-handed alpha
Helix 6	AA6	B	46	49	Right-handed 310
Helix 7	AA7	B	77	85	Right-handed alpha
Helix 8	AA8	B	213	226	Right-handed alpha
Helix 9	AA9	C	35	40	Right-handed alpha
Helix 10	AB1	C	48	53	Right-handed alpha
Helix 11	AB2	C	81	85	Right-handed 310
Helix 12	AB3	C	198	201	Right-handed 310
Helix 13	AB4	C	207	209	Right-handed 310
Helix 14	AB5	C	216	221	Right-handed alpha
Helix 15	AB6	C	288	292	Right-handed 310
Helix 16	AB7	C	318	324	Right-handed alpha
Helix 17	AB8	C	349	354	Right-handed alpha
Helix 18	AB9	C	362	371	Right-handed alpha
Helix 19	AC1	C	382	390	Right-handed alpha
Helix 20	AC2	C	398	410	Right-handed alpha
Helix 21	AC3	C	421	438	Right-handed alpha
Helix 22	AC4	C	455	473	Right-handed alpha
Helix 23	AC5	C	474	481	Right-handed alpha
Helix 24	AC6	C	488	492	Right-handed 310
Helix 25	AC7	C	497	501	Right-handed 310
Helix 26	AC8	C	520	528	Right-handed alpha
Helix 27	AC9	C	670	674	Right-handed 310
Helix 28	AD1	C	819	825	Right-handed alpha
Helix 29	AD2	C	858	863	Right-handed alpha
Helix 30	AD3	C	900	907	Right-handed alpha
Helix 31	AD4	C	947	962	Right-handed alpha
Helix 32	AD5	C	967	972	Right-handed alpha
Helix 33	AD6	C	977	981	Right-handed 310
Helix 34	AD7	C	985	990	Right-handed alpha
Helix 35	AD8	C	994	998	Right-handed 310
Helix 36	AD9	C	1007	1030	Right-handed alpha
Helix 37	AE1	C	1102	1107	Right-handed alpha
Helix 38	AE2	C	1113	1122	Right-handed alpha
Helix 39	AE3	C	1123	1134	Right-handed alpha
Helix 40	AE4	C	1137	1146	Right-handed alpha
Helix 41	AE5	C	1192	1200	Right-handed alpha
Helix 42	AE6	C	1238	1242	Right-handed 310
Helix 43	AE7	C	1271	1279	Right-handed alpha
Helix 44	AE8	C	1297	1310	Right-handed alpha
Helix 45	AE9	C	1327	1332	Right-handed alpha
Helix 46	AF1	D	29	33	Right-handed alpha
Helix 47	AF2	D	131	135	Right-handed 310
Helix 48	AF3	D	161	172	Right-handed alpha
Helix 49	AF4	D	180	184	Right-handed 310
Helix 50	AF5	D	219	223	Right-handed 310
Helix 51	AF6	D	263	268	Right-handed 310
Helix 52	AF7	D	269	278	Right-handed alpha
Helix 53	AF8	D	288	293	Right-handed alpha
Helix 54	AF9	D	295	304	Right-handed alpha
Helix 55	AG1	D	327	331	Right-handed 310
Helix 56	AG2	D	377	387	Right-handed alpha
Helix 57	AG3	D	397	402	Right-handed alpha
Helix 58	AG4	D	430	432	Right-handed 310
Helix 59	AG5	D	453	458	Right-handed alpha
Helix 60	AG6	D	477	481	Right-handed 310
Helix 61	AG7	D	508	513	Right-handed alpha
Helix 62	AG8	D	533	538	Right-handed alpha
Helix 63	AG9	D	574	579	Right-handed alpha
Helix 64	AH1	D	580	582	Right-handed 310
Helix 65	AH2	D	588	592	Right-handed 310
Helix 66	AH3	D	608	613	Right-handed alpha
Helix 67	AH4	D	615	634	Right-handed alpha
Helix 68	AH5	D	657	670	Right-handed alpha
Helix 69	AH6	D	682	696	Right-handed alpha
Helix 70	AH7	D	720	725	Right-handed alpha
Helix 71	AH8	D	768	774	Right-handed alpha
Helix 72	AH9	D	775	777	Right-handed 310
Helix 73	AI1	D	785	790	Right-handed alpha
Helix 74	AI2	D	791	794	Right-handed 310
Helix 75	AI3	D	796	805	Right-handed alpha
Helix 76	AI4	D	834	839	Right-handed alpha
Helix 77	AI5	D	870	875	Right-handed alpha
Helix 78	AI6	D	884	888	Right-handed 310
Helix 79	AI7	D	914	925	Right-handed alpha
Helix 80	AI8	D	926	929	Right-handed 310
Helix 81	AI9	D	1138	1143	Right-handed alpha
Helix 82	AJ1	D	1216	1222	Right-handed alpha
Helix 83	AJ2	D	1229	1244	Right-handed alpha
Helix 84	AJ3	D	1255	1261	Right-handed alpha
Helix 85	AJ4	D	1308	1313	Right-handed alpha
Helix 86	AJ5	D	1332	1337	Right-handed alpha
Helix 87	AJ6	D	1359	1361	Right-handed 310
Helix 88	AJ7	D	1362	1371	Right-handed alpha
Helix 89	AJ8	E	9	14	Right-handed alpha
Helix 90	AJ9	E	22	27	Right-handed alpha
Helix 91	AK1	E	45	50	Right-handed alpha
Helix 92	AK2	E	52	57	Right-handed alpha
Helix 93	AK3	E	60	65	Right-handed alpha
Helix 94	AK4	E	68	73	Right-handed alpha
Helix 95	AK5	F	72	85	Right-handed alpha
Helix 96	AK6	F	87	98	Right-handed alpha
Helix 97	AK7	F	100	106	Right-handed alpha
Helix 98	AK8	F	117	132	Right-handed alpha
Helix 99	AK9	F	146	160	Right-handed alpha
Helix 100	AL1	F	168	176	Right-handed alpha
Helix 101	AL2	F	176	190	Right-handed alpha
Helix 102	AL3	F	194	203	Right-handed alpha
Helix 103	AL4	F	205	210	Right-handed alpha
Helix 104	AL5	F	233	237	Right-handed 310
Helix 105	AL6	F	245	251	Right-handed alpha
Helix 106	AL7	F	253	263	Right-handed alpha
Helix 107	AL8	F	267	277	Right-handed alpha
Helix 108	AL9	F	289	296	Right-handed alpha
Helix 109	AM1	F	299	310	Right-handed alpha
Helix 110	AM2	F	311	321	Right-handed alpha
Helix 111	AM3	J	9	19	Right-handed alpha
Helix 112	AM4	J	89	110	Right-handed alpha

There are 41 sheets in PDB entry 6KJ6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	12	16	first strand
Strand 2	A	25	29	anti-parallel
Strand 3	A	202	204	anti-parallel
Strand 4	A	185	186	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	56	first strand
Strand 2	A	144	149	anti-parallel
Strand 3	A	98	100	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	91	first strand
Strand 2	A	122	123	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	103	104	first strand
Strand 2	A	140	141	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	26	31	first strand
Strand 2	B	199	203	anti-parallel
Strand 3	B	185	188	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	99	102	first strand
Strand 2	B	142	150	anti-parallel
Strand 3	B	52	61	anti-parallel
Strand 4	B	171	172	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	92	first strand
Strand 2	B	122	123	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	66	69	first strand
Strand 2	C	101	104	anti-parallel
Strand 3	C	118	119	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	73	74	first strand
Strand 2	C	97	98	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	93	95	first strand
Strand 2	C	126	128	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	143	145	first strand
Strand 2	C	512	514	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	147	148	first strand
Strand 2	C	529	531	parallel
Strand 3	C	573	574	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	158	159	first strand
Strand 2	C	172	175	anti-parallel
Strand 3	C	185	187	anti-parallel
Strand 4	C	195	197	anti-parallel
Strand 5	C	204	205	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	228	229	first strand
Strand 2	C	334	335	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	256	257	first strand
Strand 2	C	260	261	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	296	297	first strand
Strand 2	C	315	316	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	580	581	first strand
Strand 2	C	587	595	anti-parallel
Strand 3	C	598	606	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	722	727	first strand
Strand 2	C	731	736	anti-parallel
Strand 3	C	750	752	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	757	758	first strand
Strand 2	C	764	765	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	768	769	first strand
Strand 2	C	784	785	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	789	790	first strand
Strand 2	C	793	794	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	798	803	first strand
Strand 2	C	1225	1232	anti-parallel
Strand 3	C	1209	1210	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	835	840	first strand
Strand 2	C	1048	1053	anti-parallel
Strand 3	C	931	934	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	887	888	first strand
Strand 2	C	914	915	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1065	1066	first strand
Strand 2	C	1074	1075	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1244	1246	first strand
Strand 2	D	350	355	anti-parallel
Strand 3	D	465	469	anti-parallel
Strand 4	D	422	424	anti-parallel
Strand 5	D	434	436	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1244	1246	first strand
Strand 2	D	350	355	anti-parallel
Strand 3	D	446	447	parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1335	1337	first strand
Strand 2	D	20	24	anti-parallel
Strand 3	D	1341	1342	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	34	37	first strand
Strand 2	D	102	112	parallel
Strand 3	D	238	244	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	144	145	first strand
Strand 2	D	159	160	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	261	262	first strand
Strand 2	F	220	221	parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	526	527	first strand
Strand 2	D	547	553	parallel
Strand 3	D	567	573	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	820	821	first strand
Strand 2	D	881	882	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	825	826	first strand
Strand 2	D	831	833	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	847	848	first strand
Strand 2	D	857	858	anti-parallel

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There are 5 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	949	951	first strand
Strand 2	D	1016	1020	anti-parallel
Strand 3	D	1001	1003	anti-parallel
Strand 4	D	973	975	anti-parallel
Strand 5	D	965	967	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	991	996	first strand
Strand 2	D	981	985	anti-parallel
Strand 3	D	956	961	anti-parallel
Strand 4	D	1010	1011	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1034	1038	first strand
Strand 2	D	1077	1081	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1046	1049	first strand
Strand 2	D	1058	1061	anti-parallel
Strand 3	D	1105	1106	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1156	1157	first strand
Strand 2	D	1208	1209	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	32	34	first strand
Strand 2	J	57	61	anti-parallel
Strand 3	J	68	72	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6KJ6

Analysis of interatomic Contacts of Structural Units in PDB entry:
6KJ6