Analysis of interatomic Contacts of Structural Units in PDB entry:
6KJ8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6KJ8 entry

There are 6 chains in PDB entry 6KJ8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1VAL 309
B
 LYS 13ASN 153
C
 ALA 1VAL 309
D
 THR 16ASN 153
E
 ALA 1LEU 310
F
 ALA 11VAL 149
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 55 helices in PDB entry 6KJ8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 15Right-handed 310
Helix 2
AA2
A
16 33Right-handed alpha
Helix 3
AA3
A
52 66Right-handed alpha
Helix 4
AA4
A
87 99Right-handed alpha
Helix 5
AA5
A
110 117Right-handed alpha
Helix 6
AA6
A
134 150Right-handed alpha
Helix 7
AA7
A
166 177Right-handed alpha
Helix 8
AA8
A
189 193Right-handed 310
Helix 9
AA9
A
195 205Right-handed alpha
Helix 10
AB1
A
214 218Right-handed 310
Helix 11
AB2
A
231 235Right-handed 310
Helix 12
AB3
A
236 248Right-handed alpha
Helix 13
AB4
A
250 254Right-handed 310
Helix 14
AB5
A
274 280Right-handed alpha
Helix 15
AB6
A
284 305Right-handed alpha
Helix 16
AB7
B
25 33Right-handed alpha
Helix 17
AB8
B
67 73Right-handed alpha
Helix 18
AB9
B
74 77Right-handed 310
Helix 19
AC1
B
147 152Right-handed alpha
Helix 20
AC2
C
11 15Right-handed 310
Helix 21
AC3
C
16 33Right-handed alpha
Helix 22
AC4
C
52 66Right-handed alpha
Helix 23
AC5
C
87 99Right-handed alpha
Helix 24
AC6
C
110 117Right-handed alpha
Helix 25
AC7
C
134 150Right-handed alpha
Helix 26
AC8
C
166 177Right-handed alpha
Helix 27
AC9
C
189 193Right-handed 310
Helix 28
AD1
C
195 205Right-handed alpha
Helix 29
AD2
C
214 218Right-handed 310
Helix 30
AD3
C
231 235Right-handed 310
Helix 31
AD4
C
236 248Right-handed alpha
Helix 32
AD5
C
250 254Right-handed 310
Helix 33
AD6
C
274 280Right-handed 310
Helix 34
AD7
C
284 305Right-handed alpha
Helix 35
AD8
D
26 33Right-handed alpha
Helix 36
AD9
D
67 73Right-handed alpha
Helix 37
AE1
D
147 152Right-handed alpha
Helix 38
AE2
E
11 15Right-handed 310
Helix 39
AE3
E
16 33Right-handed alpha
Helix 40
AE4
E
52 66Right-handed alpha
Helix 41
AE5
E
87 99Right-handed alpha
Helix 42
AE6
E
110 117Right-handed alpha
Helix 43
AE7
E
134 150Right-handed alpha
Helix 44
AE8
E
166 177Right-handed alpha
Helix 45
AE9
E
189 193Right-handed 310
Helix 46
AF1
E
195 205Right-handed alpha
Helix 47
AF2
E
214 219Right-handed 310
Helix 48
AF3
E
231 235Right-handed 310
Helix 49
AF4
E
236 248Right-handed alpha
Helix 50
AF5
E
250 255Right-handed 310
Helix 51
AF6
E
274 279Right-handed alpha
Helix 52
AF7
E
284 305Right-handed alpha
Helix 53
AF8
F
25 33Right-handed alpha
Helix 54
AF9
F
67 73Right-handed alpha
Helix 55
AG1
F
147 152Right-handed alpha
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There are 12 sheets in PDB entry 6KJ8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 73first strand
Strand 2
A
43 48parallel
Strand 3
A
101 106parallel
Strand 4
A
124 129parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 212first strand
Strand 2
A
183 187parallel
Strand 3
A
156 160parallel
Strand 4
A
224 227parallel
Strand 5
A
262 264parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 45first strand
Strand 2
B
56 61anti-parallel
Strand 3
B
16 22anti-parallel
Strand 4
B
82 86anti-parallel
Strand 5
B
91 95anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
102 104first strand
Strand 2
B
124 129anti-parallel
Strand 3
B
134 138anti-parallel
Strand 4
B
144 146anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
69 73first strand
Strand 2
C
43 48parallel
Strand 3
C
101 106parallel
Strand 4
C
124 129parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
208 212first strand
Strand 2
C
183 187parallel
Strand 3
C
156 160parallel
Strand 4
C
224 227parallel
Strand 5
C
262 264parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
42 45first strand
Strand 2
D
58 61anti-parallel
Strand 3
D
17 19anti-parallel
Strand 4
D
82 84anti-parallel
Strand 5
D
94 95anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
102 104first strand
Strand 2
D
124 129anti-parallel
Strand 3
D
134 138anti-parallel
Strand 4
D
144 146anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
69 74first strand
Strand 2
E
43 48parallel
Strand 3
E
101 106parallel
Strand 4
E
124 129parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
208 212first strand
Strand 2
E
183 187parallel
Strand 3
E
156 160parallel
Strand 4
E
224 227parallel
Strand 5
E
262 264parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
42 50first strand
Strand 2
F
54 62anti-parallel
Strand 3
F
15 22anti-parallel
Strand 4
F
82 87anti-parallel
Strand 5
F
90 95anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
102 104first strand
Strand 2
F
124 129anti-parallel
Strand 3
F
134 138anti-parallel
Strand 4
F
144 146anti-parallel
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