Analysis of interatomic Contacts of Structural Units in PDB entry:
6KJB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6KJB entry

There are 2 chains in PDB entry 6KJB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1VAL 309
B
 ALA 11ASN 153
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 6KJB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 15Right-handed 310
Helix 2
AA2
A
16 33Right-handed alpha
Helix 3
AA3
A
52 66Right-handed alpha
Helix 4
AA4
A
87 96Right-handed alpha
Helix 5
AA5
A
110 117Right-handed alpha
Helix 6
AA6
A
134 150Right-handed alpha
Helix 7
AA7
A
166 177Right-handed alpha
Helix 8
AA8
A
189 193Right-handed 310
Helix 9
AA9
A
195 205Right-handed alpha
Helix 10
AB1
A
214 222Right-handed 310
Helix 11
AB2
A
231 235Right-handed 310
Helix 12
AB3
A
236 244Right-handed alpha
Helix 13
AB4
A
245 248Right-handed 310
Helix 14
AB5
A
250 255Right-handed 310
Helix 15
AB6
A
274 278Right-handed 310
Helix 16
AB7
A
284 305Right-handed alpha
Helix 17
AB8
B
25 33Right-handed alpha
Helix 18
AB9
B
67 73Right-handed alpha
Helix 19
AC1
B
114 118Right-handed 310
Helix 20
AC2
B
147 151Right-handed alpha
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There are 4 sheets in PDB entry 6KJB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 74first strand
Strand 2
A
43 48parallel
Strand 3
A
101 106parallel
Strand 4
A
124 129parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 211first strand
Strand 2
A
183 187parallel
Strand 3
A
156 160parallel
Strand 4
A
224 227parallel
Strand 5
A
262 264parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
42 45first strand
Strand 2
B
58 62anti-parallel
Strand 3
B
15 19anti-parallel
Strand 4
B
82 87anti-parallel
Strand 5
B
90 91anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
102 104first strand
Strand 2
B
124 129anti-parallel
Strand 3
B
134 138anti-parallel
Strand 4
B
144 146anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il