Analysis of interatomic Contacts of Structural Units in PDB entry:
6KJC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6KJC entry

There are 2 chains in PDB entry 6KJC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS -13GLN 399
B
 GLY -15GLN 399
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 6KJC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
-7 -2Right-handed alpha
Helix 2
AA2
A
0 11Right-handed alpha
Helix 3
AA3
A
58 73Right-handed alpha
Helix 4
AA4
A
86 91Right-handed alpha
Helix 5
AA5
A
114 120Right-handed alpha
Helix 6
AA6
A
127 130Right-handed 310
Helix 7
AA7
A
131 141Right-handed alpha
Helix 8
AA8
A
151 156Right-handed alpha
Helix 9
AA9
A
172 186Right-handed alpha
Helix 10
AB1
A
188 197Right-handed alpha
Helix 11
AB2
A
213 218Right-handed alpha
Helix 12
AB3
A
232 237Right-handed alpha
Helix 13
AB4
A
259 272Right-handed alpha
Helix 14
AB5
A
278 286Right-handed alpha
Helix 15
AB6
A
291 304Right-handed alpha
Helix 16
AB7
A
306 312Right-handed alpha
Helix 17
AB8
A
373 397Right-handed alpha
Helix 18
AB9
B
-7 -2Right-handed alpha
Helix 19
AC1
B
0 11Right-handed alpha
Helix 20
AC2
B
58 73Right-handed alpha
Helix 21
AC3
B
86 91Right-handed alpha
Helix 22
AC4
B
114 120Right-handed alpha
Helix 23
AC5
B
131 141Right-handed alpha
Helix 24
AC6
B
172 186Right-handed alpha
Helix 25
AC7
B
188 197Right-handed alpha
Helix 26
AC8
B
213 218Right-handed alpha
Helix 27
AC9
B
232 237Right-handed alpha
Helix 28
AD1
B
259 272Right-handed alpha
Helix 29
AD2
B
278 286Right-handed alpha
Helix 30
AD3
B
291 304Right-handed alpha
Helix 31
AD4
B
306 312Right-handed alpha
Helix 32
AD5
B
373 397Right-handed alpha
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There are 6 sheets in PDB entry 6KJC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 46first strand
Strand 2
A
29 38anti-parallel
Strand 3
A
14 22anti-parallel
Strand 4
A
360 368anti-parallel
Strand 5
A
350 355anti-parallel
Strand 6
A
341 346anti-parallel
Strand 7
A
327 329anti-parallel
Strand 8
A
320 322anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 54first strand
Strand 2
A
255 258anti-parallel
Strand 3
A
207 208anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 98first strand
Strand 2
A
104 105anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 46first strand
Strand 2
B
29 38anti-parallel
Strand 3
B
14 22anti-parallel
Strand 4
B
360 368anti-parallel
Strand 5
B
350 355anti-parallel
Strand 6
B
341 346anti-parallel
Strand 7
B
326 329anti-parallel
Strand 8
B
320 323anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 54first strand
Strand 2
B
255 258anti-parallel
Strand 3
B
207 208anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
97 98first strand
Strand 2
B
104 105anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il