Analysis of interatomic Contacts of Structural Units in PDB entry:
6KJF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6KJF entry

There are 2 chains in PDB entry 6KJF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 HIS 0GLN 399
A
 HIS 0GLN 399
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 6KJF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
0 11Right-handed alpha
Helix 2
AA2
B
58 73Right-handed alpha
Helix 3
AA3
B
86 91Right-handed alpha
Helix 4
AA4
B
114 120Right-handed alpha
Helix 5
AA5
B
131 141Right-handed alpha
Helix 6
AA6
B
151 156Right-handed alpha
Helix 7
AA7
B
172 186Right-handed alpha
Helix 8
AA8
B
188 197Right-handed alpha
Helix 9
AA9
B
197 202Right-handed alpha
Helix 10
AB1
B
213 218Right-handed alpha
Helix 11
AB2
B
232 237Right-handed alpha
Helix 12
AB3
B
240 246Right-handed alpha
Helix 13
AB4
B
259 272Right-handed alpha
Helix 14
AB5
B
278 286Right-handed alpha
Helix 15
AB6
B
291 304Right-handed alpha
Helix 16
AB7
B
306 312Right-handed alpha
Helix 17
AB8
B
373 399Right-handed alpha
Helix 18
AB9
A
1 11Right-handed alpha
Helix 19
AC1
A
58 73Right-handed alpha
Helix 20
AC2
A
86 91Right-handed alpha
Helix 21
AC3
A
114 120Right-handed alpha
Helix 22
AC4
A
131 142Right-handed alpha
Helix 23
AC5
A
151 156Right-handed alpha
Helix 24
AC6
A
172 186Right-handed alpha
Helix 25
AC7
A
188 197Right-handed alpha
Helix 26
AC8
A
198 202Right-handed 310
Helix 27
AC9
A
213 218Right-handed alpha
Helix 28
AD1
A
232 237Right-handed alpha
Helix 29
AD2
A
240 245Right-handed alpha
Helix 30
AD3
A
259 272Right-handed alpha
Helix 31
AD4
A
278 286Right-handed alpha
Helix 32
AD5
A
291 304Right-handed alpha
Helix 33
AD6
A
306 312Right-handed alpha
Helix 34
AD7
A
373 398Right-handed alpha
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There are 6 sheets in PDB entry 6KJF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 46first strand
Strand 2
B
29 38anti-parallel
Strand 3
B
14 22anti-parallel
Strand 4
B
360 368anti-parallel
Strand 5
B
350 355anti-parallel
Strand 6
B
342 346anti-parallel
Strand 7
B
327 329anti-parallel
Strand 8
B
320 322anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 54first strand
Strand 2
B
255 258anti-parallel
Strand 3
B
207 208anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
94 98first strand
Strand 2
B
104 107anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 46first strand
Strand 2
A
29 38anti-parallel
Strand 3
A
14 22anti-parallel
Strand 4
A
360 368anti-parallel
Strand 5
A
350 355anti-parallel
Strand 6
A
342 346anti-parallel
Strand 7
A
327 329anti-parallel
Strand 8
A
320 322anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 54first strand
Strand 2
A
255 258anti-parallel
Strand 3
A
207 208anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 98first strand
Strand 2
A
104 107anti-parallel
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