Analysis of interatomic Contacts of Structural Units in PDB entry:
6KJI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6KJI entry

There are 3 chains in PDB entry 6KJI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 548SER 899
B
 SER 548SER 899
C
 SER 548SER 899
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 67 helices in PDB entry 6KJI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
558 564Right-handed alpha
Helix 2
AA2
A
569 575Right-handed alpha
Helix 3
AA3
A
577 603Right-handed alpha
Helix 4
AA4
A
611 625Right-handed alpha
Helix 5
AA5
A
626 631Right-handed alpha
Helix 6
AA6
A
633 635Right-handed 310
Helix 7
AA7
A
638 647Right-handed alpha
Helix 8
AA8
A
649 660Right-handed alpha
Helix 9
AA9
A
662 668Right-handed alpha
Helix 10
AB1
A
672 679Right-handed alpha
Helix 11
AB2
A
681 689Right-handed alpha
Helix 12
AB3
A
689 710Right-handed alpha
Helix 13
AB4
A
723 734Right-handed alpha
Helix 14
AB5
A
750 752Right-handed 310
Helix 15
AB6
A
753 761Right-handed alpha
Helix 16
AB7
A
762 766Right-handed 310
Helix 17
AB8
A
779 783Right-handed 310
Helix 18
AB9
A
797 801Right-handed 310
Helix 19
AC1
A
803 814Right-handed alpha
Helix 20
AC2
A
830 838Right-handed alpha
Helix 21
AC3
A
840 845Right-handed 310
Helix 22
AC4
A
846 850Right-handed 310
Helix 23
AC5
A
858 868Right-handed alpha
Helix 24
AC6
B
558 564Right-handed alpha
Helix 25
AC7
B
569 575Right-handed alpha
Helix 26
AC8
B
577 603Right-handed alpha
Helix 27
AC9
B
611 625Right-handed alpha
Helix 28
AD1
B
626 634Right-handed alpha
Helix 29
AD2
B
643 649Right-handed alpha
Helix 30
AD3
B
649 660Right-handed alpha
Helix 31
AD4
B
662 668Right-handed alpha
Helix 32
AD5
B
672 679Right-handed alpha
Helix 33
AD6
B
681 686Right-handed alpha
Helix 34
AD7
B
689 710Right-handed alpha
Helix 35
AD8
B
723 734Right-handed alpha
Helix 36
AD9
B
750 752Right-handed 310
Helix 37
AE1
B
753 761Right-handed alpha
Helix 38
AE2
B
762 766Right-handed 310
Helix 39
AE3
B
779 783Right-handed 310
Helix 40
AE4
B
797 801Right-handed 310
Helix 41
AE5
B
803 814Right-handed alpha
Helix 42
AE6
B
830 838Right-handed alpha
Helix 43
AE7
B
840 845Right-handed 310
Helix 44
AE8
B
846 850Right-handed 310
Helix 45
AE9
B
858 868Right-handed alpha
Helix 46
AF1
C
558 564Right-handed alpha
Helix 47
AF2
C
569 575Right-handed alpha
Helix 48
AF3
C
577 603Right-handed alpha
Helix 49
AF4
C
611 625Right-handed alpha
Helix 50
AF5
C
626 634Right-handed alpha
Helix 51
AF6
C
638 648Right-handed alpha
Helix 52
AF7
C
649 660Right-handed alpha
Helix 53
AF8
C
662 668Right-handed alpha
Helix 54
AF9
C
672 679Right-handed alpha
Helix 55
AG1
C
681 689Right-handed alpha
Helix 56
AG2
C
689 710Right-handed alpha
Helix 57
AG3
C
723 734Right-handed alpha
Helix 58
AG4
C
750 752Right-handed 310
Helix 59
AG5
C
753 761Right-handed alpha
Helix 60
AG6
C
762 766Right-handed 310
Helix 61
AG7
C
779 783Right-handed 310
Helix 62
AG8
C
797 801Right-handed 310
Helix 63
AG9
C
803 814Right-handed alpha
Helix 64
AH1
C
830 839Right-handed alpha
Helix 65
AH2
C
840 845Right-handed 310
Helix 66
AH3
C
846 850Right-handed 310
Helix 67
AH4
C
858 868Right-handed alpha
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There are 6 sheets in PDB entry 6KJI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
551 552first strand
Strand 2
A
555 556anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
768 772first strand
Strand 2
A
743 748parallel
Strand 3
A
714 718parallel
Strand 4
A
789 795parallel
Strand 5
A
815 826parallel
Strand 6
A
888 894anti-parallel
Strand 7
A
876 879anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
551 552first strand
Strand 2
B
555 556anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
768 772first strand
Strand 2
B
743 748parallel
Strand 3
B
714 718parallel
Strand 4
B
789 795parallel
Strand 5
B
815 826parallel
Strand 6
B
888 894anti-parallel
Strand 7
B
876 879anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
551 552first strand
Strand 2
C
555 556anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
768 772first strand
Strand 2
C
743 748parallel
Strand 3
C
714 718parallel
Strand 4
C
789 795parallel
Strand 5
C
815 826parallel
Strand 6
C
888 894anti-parallel
Strand 7
C
876 879anti-parallel
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