Analysis of interatomic Contacts of Structural Units in PDB entry:
6KKM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6KKM entry

There are 8 chains in PDB entry 6KKM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
E	GLU 17	GLU 361
F	LEU 18	GLU 361
G	GLU 17	GLU 361
H	GLU 17	GLU 361
A	LEU 23	MET 473
B	ARG 22	ILE 466
C	ARG 22	MET 473
D	ARG 22	ILE 466

There are140 helices in PDB entry 6KKM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	E	19	28	Right-handed alpha
Helix 2	AA2	E	32	46	Right-handed alpha
Helix 3	AA3	E	49	57	Right-handed alpha
Helix 4	AA4	E	60	80	Right-handed alpha
Helix 5	AA5	E	83	91	Right-handed alpha
Helix 6	AA6	E	94	101	Right-handed alpha
Helix 7	AA7	E	108	119	Right-handed alpha
Helix 8	AA8	E	122	138	Right-handed alpha
Helix 9	AA9	E	149	163	Right-handed alpha
Helix 10	AB1	E	167	170	Right-handed 310
Helix 11	AB2	E	171	182	Right-handed alpha
Helix 12	AB3	E	184	194	Right-handed alpha
Helix 13	AB4	E	214	218	Right-handed 310
Helix 14	AB5	E	233	239	Right-handed alpha
Helix 15	AB6	E	266	272	Right-handed alpha
Helix 16	AB7	E	283	285	Right-handed 310
Helix 17	AB8	F	19	28	Right-handed alpha
Helix 18	AB9	F	32	46	Right-handed alpha
Helix 19	AC1	F	49	57	Right-handed alpha
Helix 20	AC2	F	60	80	Right-handed alpha
Helix 21	AC3	F	83	90	Right-handed alpha
Helix 22	AC4	F	94	100	Right-handed alpha
Helix 23	AC5	F	105	120	Right-handed alpha
Helix 24	AC6	F	122	138	Right-handed alpha
Helix 25	AC7	F	149	164	Right-handed alpha
Helix 26	AC8	F	167	170	Right-handed 310
Helix 27	AC9	F	171	182	Right-handed alpha
Helix 28	AD1	F	184	194	Right-handed alpha
Helix 29	AD2	F	233	239	Right-handed alpha
Helix 30	AD3	F	266	272	Right-handed alpha
Helix 31	AD4	F	283	285	Right-handed 310
Helix 32	AD5	G	19	28	Right-handed alpha
Helix 33	AD6	G	32	46	Right-handed alpha
Helix 34	AD7	G	49	57	Right-handed alpha
Helix 35	AD8	G	60	80	Right-handed alpha
Helix 36	AD9	G	83	90	Right-handed alpha
Helix 37	AE1	G	94	101	Right-handed alpha
Helix 38	AE2	G	102	104	Right-handed 310
Helix 39	AE3	G	107	119	Right-handed alpha
Helix 40	AE4	G	122	138	Right-handed alpha
Helix 41	AE5	G	149	163	Right-handed alpha
Helix 42	AE6	G	168	170	Right-handed 310
Helix 43	AE7	G	171	182	Right-handed alpha
Helix 44	AE8	G	184	194	Right-handed alpha
Helix 45	AE9	G	233	239	Right-handed alpha
Helix 46	AF1	G	266	272	Right-handed alpha
Helix 47	AF2	G	283	285	Right-handed 310
Helix 48	AF3	H	19	29	Right-handed alpha
Helix 49	AF4	H	32	46	Right-handed alpha
Helix 50	AF5	H	49	57	Right-handed alpha
Helix 51	AF6	H	60	80	Right-handed alpha
Helix 52	AF7	H	83	90	Right-handed alpha
Helix 53	AF8	H	94	101	Right-handed alpha
Helix 54	AF9	H	108	119	Right-handed alpha
Helix 55	AG1	H	122	138	Right-handed alpha
Helix 56	AG2	H	149	163	Right-handed alpha
Helix 57	AG3	H	171	182	Right-handed alpha
Helix 58	AG4	H	184	194	Right-handed alpha
Helix 59	AG5	H	233	240	Right-handed alpha
Helix 60	AG6	H	266	272	Right-handed alpha
Helix 61	AG7	H	283	285	Right-handed 310
Helix 62	AG8	A	50	63	Right-handed alpha
Helix 63	AG9	A	70	75	Right-handed 310
Helix 64	AH1	A	78	82	Right-handed 310
Helix 65	AH2	A	105	109	Right-handed 310
Helix 66	AH3	A	113	122	Right-handed alpha
Helix 67	AH4	A	124	128	Right-handed 310
Helix 68	AH5	A	142	147	Right-handed alpha
Helix 69	AH6	A	155	164	Right-handed alpha
Helix 70	AH7	A	182	196	Right-handed alpha
Helix 71	AH8	A	214	234	Right-handed alpha
Helix 72	AH9	A	247	261	Right-handed alpha
Helix 73	AI1	A	270	274	Right-handed alpha
Helix 74	AI2	A	274	289	Right-handed alpha
Helix 75	AI3	A	299	304	Right-handed alpha
Helix 76	AI4	A	311	322	Right-handed alpha
Helix 77	AI5	A	336	352	Right-handed alpha
Helix 78	AI6	A	384	386	Right-handed 310
Helix 79	AI7	A	387	395	Right-handed alpha
Helix 80	AI8	A	413	435	Right-handed alpha
Helix 81	AI9	A	437	453	Right-handed alpha
Helix 82	AJ1	A	453	463	Right-handed alpha
Helix 83	AJ2	B	50	64	Right-handed alpha
Helix 84	AJ3	B	70	75	Right-handed 310
Helix 85	AJ4	B	105	109	Right-handed 310
Helix 86	AJ5	B	113	122	Right-handed alpha
Helix 87	AJ6	B	124	128	Right-handed 310
Helix 88	AJ7	B	142	147	Right-handed alpha
Helix 89	AJ8	B	155	164	Right-handed alpha
Helix 90	AJ9	B	182	196	Right-handed alpha
Helix 91	AK1	B	214	234	Right-handed alpha
Helix 92	AK2	B	247	261	Right-handed alpha
Helix 93	AK3	B	270	274	Right-handed alpha
Helix 94	AK4	B	274	288	Right-handed alpha
Helix 95	AK5	B	299	304	Right-handed alpha
Helix 96	AK6	B	311	322	Right-handed alpha
Helix 97	AK7	B	336	352	Right-handed alpha
Helix 98	AK8	B	384	386	Right-handed 310
Helix 99	AK9	B	387	395	Right-handed alpha
Helix 100	AL1	B	413	435	Right-handed alpha
Helix 101	AL2	B	437	451	Right-handed alpha
Helix 102	AL3	B	453	463	Right-handed alpha
Helix 103	AL4	C	50	64	Right-handed alpha
Helix 104	AL5	C	105	109	Right-handed 310
Helix 105	AL6	C	113	122	Right-handed alpha
Helix 106	AL7	C	124	128	Right-handed 310
Helix 107	AL8	C	142	147	Right-handed alpha
Helix 108	AL9	C	155	163	Right-handed alpha
Helix 109	AM1	C	182	196	Right-handed alpha
Helix 110	AM2	C	214	234	Right-handed alpha
Helix 111	AM3	C	247	261	Right-handed alpha
Helix 112	AM4	C	270	274	Right-handed alpha
Helix 113	AM5	C	274	289	Right-handed alpha
Helix 114	AM6	C	311	322	Right-handed alpha
Helix 115	AM7	C	336	352	Right-handed alpha
Helix 116	AM8	C	384	386	Right-handed 310
Helix 117	AM9	C	387	395	Right-handed alpha
Helix 118	AN1	C	413	435	Right-handed alpha
Helix 119	AN2	C	437	453	Right-handed alpha
Helix 120	AN3	C	453	463	Right-handed alpha
Helix 121	AN4	D	50	64	Right-handed alpha
Helix 122	AN5	D	70	75	Right-handed 310
Helix 123	AN6	D	105	109	Right-handed 310
Helix 124	AN7	D	113	122	Right-handed alpha
Helix 125	AN8	D	124	128	Right-handed 310
Helix 126	AN9	D	142	147	Right-handed alpha
Helix 127	AO1	D	155	164	Right-handed alpha
Helix 128	AO2	D	182	196	Right-handed alpha
Helix 129	AO3	D	214	234	Right-handed alpha
Helix 130	AO4	D	247	261	Right-handed alpha
Helix 131	AO5	D	270	274	Right-handed alpha
Helix 132	AO6	D	274	289	Right-handed alpha
Helix 133	AO7	D	299	304	Right-handed alpha
Helix 134	AO8	D	311	322	Right-handed alpha
Helix 135	AO9	D	336	352	Right-handed alpha
Helix 136	AP1	D	384	386	Right-handed 310
Helix 137	AP2	D	387	395	Right-handed alpha
Helix 138	AP3	D	413	435	Right-handed alpha
Helix 139	AP4	D	437	453	Right-handed alpha
Helix 140	AP5	D	453	463	Right-handed alpha

There are 19 sheets in PDB entry 6KKM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	211	212	first strand
Strand 2	F	334	342	parallel
Strand 3	F	295	301	anti-parallel
Strand 4	F	275	281	anti-parallel
Strand 5	F	222	229	parallel
Strand 6	F	258	263	anti-parallel
Strand 7	E	252	254	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	211	212	first strand
Strand 2	F	334	342	parallel
Strand 3	F	313	316	anti-parallel
Strand 4	F	321	324	anti-parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	321	324	first strand
Strand 2	E	313	316	anti-parallel
Strand 3	E	334	342	anti-parallel
Strand 4	E	295	301	anti-parallel
Strand 5	E	275	281	anti-parallel
Strand 6	E	222	229	parallel
Strand 7	E	258	263	anti-parallel
Strand 8	F	252	254	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	211	212	first strand
Strand 2	H	334	342	parallel
Strand 3	H	295	301	anti-parallel
Strand 4	H	275	281	anti-parallel
Strand 5	H	222	229	parallel
Strand 6	H	258	263	anti-parallel
Strand 7	G	252	254	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	211	212	first strand
Strand 2	H	334	342	parallel
Strand 3	H	313	316	anti-parallel
Strand 4	H	321	324	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	323	324	first strand
Strand 2	G	313	314	anti-parallel
Strand 3	G	336	342	anti-parallel
Strand 4	H	211	212	parallel

Back to list of sheets
Back to top of page

There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	323	324	first strand
Strand 2	G	313	314	anti-parallel
Strand 3	G	336	342	anti-parallel
Strand 4	G	295	301	anti-parallel
Strand 5	G	275	281	anti-parallel
Strand 6	G	222	229	parallel
Strand 7	G	258	263	anti-parallel
Strand 8	H	252	254	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	90	first strand
Strand 2	A	98	104	anti-parallel
Strand 3	A	37	45	anti-parallel
Strand 4	A	131	140	anti-parallel
Strand 5	A	309	310	parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	170	174	first strand
Strand 2	A	200	202	parallel
Strand 3	A	238	242	parallel
Strand 4	A	265	269	parallel
Strand 5	A	291	295	parallel
Strand 6	A	326	328	parallel
Strand 7	A	376	379	parallel
Strand 8	A	399	403	parallel
Strand 9	A	170	174	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	355	first strand
Strand 2	A	367	368	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	90	first strand
Strand 2	B	98	104	anti-parallel
Strand 3	B	37	45	anti-parallel
Strand 4	B	131	140	anti-parallel
Strand 5	B	309	310	parallel

Back to list of sheets
Back to top of page

There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	170	174	first strand
Strand 2	B	200	202	parallel
Strand 3	B	238	242	parallel
Strand 4	B	265	269	parallel
Strand 5	B	291	295	parallel
Strand 6	B	326	328	parallel
Strand 7	B	376	380	parallel
Strand 8	B	399	402	parallel
Strand 9	B	170	174	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	354	355	first strand
Strand 2	B	367	368	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	84	90	first strand
Strand 2	C	98	104	anti-parallel
Strand 3	C	37	45	anti-parallel
Strand 4	C	131	140	anti-parallel
Strand 5	C	309	310	parallel

Back to list of sheets
Back to top of page

There are 8 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	170	173	first strand
Strand 2	C	400	403	parallel
Strand 3	C	376	380	parallel
Strand 4	C	326	330	parallel
Strand 5	C	291	295	parallel
Strand 6	C	265	269	parallel
Strand 7	C	238	242	parallel
Strand 8	C	200	202	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	354	355	first strand
Strand 2	C	367	368	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	84	90	first strand
Strand 2	D	98	104	anti-parallel
Strand 3	D	37	45	anti-parallel
Strand 4	D	131	140	anti-parallel
Strand 5	D	309	310	parallel

Back to list of sheets
Back to top of page

There are 9 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	170	174	first strand
Strand 2	D	200	202	parallel
Strand 3	D	238	242	parallel
Strand 4	D	265	269	parallel
Strand 5	D	291	295	parallel
Strand 6	D	326	328	parallel
Strand 7	D	376	380	parallel
Strand 8	D	399	403	parallel
Strand 9	D	170	174	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	354	355	first strand
Strand 2	D	367	368	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6KKM

Analysis of interatomic Contacts of Structural Units in PDB entry:
6KKM