Analysis of interatomic Contacts of Structural Units in PDB entry:
6KKU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6KKU entry

There are 2 chains in PDB entry 6KKU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 116ILE 652
B
 PRO 116ILE 652
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 6KKU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
124 133Right-handed alpha
Helix 2
AA2
A
135 140Right-handed alpha
Helix 3
AA3
A
141 176Right-handed alpha
Helix 4
AA4
A
185 193Right-handed alpha
Helix 5
AA5
A
194 227Right-handed alpha
Helix 6
AA6
A
244 269Right-handed alpha
Helix 7
AA7
A
269 276Right-handed alpha
Helix 8
AA8
A
278 298Right-handed alpha
Helix 9
AA9
A
336 344Right-handed alpha
Helix 10
AB1
A
354 360Right-handed alpha
Helix 11
AB2
A
372 379Right-handed alpha
Helix 12
AB3
A
404 408Right-handed 310
Helix 13
AB4
A
419 428Right-handed alpha
Helix 14
AB5
A
429 431Right-handed 310
Helix 15
AB6
A
434 438Right-handed 310
Helix 16
AB7
A
446 477Right-handed alpha
Helix 17
AB8
A
478 483Right-handed alpha
Helix 18
AB9
A
484 488Right-handed 310
Helix 19
AC1
A
496 500Right-handed 310
Helix 20
AC2
A
504 536Right-handed alpha
Helix 21
AC3
A
539 547Right-handed 310
Helix 22
AC4
A
555 570Right-handed alpha
Helix 23
AC5
A
573 602Right-handed alpha
Helix 24
AC6
A
615 634Right-handed alpha
Helix 25
AC7
A
634 652Right-handed alpha
Helix 26
AC8
B
124 133Right-handed alpha
Helix 27
AC9
B
135 140Right-handed alpha
Helix 28
AD1
B
141 176Right-handed alpha
Helix 29
AD2
B
185 193Right-handed alpha
Helix 30
AD3
B
194 227Right-handed alpha
Helix 31
AD4
B
244 269Right-handed alpha
Helix 32
AD5
B
269 276Right-handed alpha
Helix 33
AD6
B
278 298Right-handed alpha
Helix 34
AD7
B
336 344Right-handed alpha
Helix 35
AD8
B
354 360Right-handed alpha
Helix 36
AD9
B
372 379Right-handed alpha
Helix 37
AE1
B
404 408Right-handed 310
Helix 38
AE2
B
419 428Right-handed alpha
Helix 39
AE3
B
429 431Right-handed 310
Helix 40
AE4
B
434 438Right-handed 310
Helix 41
AE5
B
446 477Right-handed alpha
Helix 42
AE6
B
478 483Right-handed alpha
Helix 43
AE7
B
484 488Right-handed 310
Helix 44
AE8
B
496 500Right-handed 310
Helix 45
AE9
B
504 536Right-handed alpha
Helix 46
AF1
B
539 547Right-handed 310
Helix 47
AF2
B
555 570Right-handed alpha
Helix 48
AF3
B
573 602Right-handed alpha
Helix 49
AF4
B
615 634Right-handed alpha
Helix 50
AF5
B
634 652Right-handed alpha
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There are 4 sheets in PDB entry 6KKU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
313 314first strand
Strand 2
A
306 310anti-parallel
Strand 3
A
362 366anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
326 329first strand
Strand 2
A
332 335anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
313 314first strand
Strand 2
B
306 310anti-parallel
Strand 3
B
362 366anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
326 329first strand
Strand 2
B
332 335anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il