Analysis of interatomic Contacts of Structural Units in PDB entry:
6KLS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6KLS entry

There are 6 chains in PDB entry 6KLS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE 8ILE 170
B
 ILE 7TRP 401
C
 THR 3GLY 238
D
 PHE 8ILE 170
E
 ILE 7TRP 401
F
 THR 3GLY 238
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 6KLS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 33Right-handed alpha
Helix 2
AA2
A
50 52Right-handed 310
Helix 3
AA3
B
8 16Right-handed alpha
Helix 4
AA4
B
16 25Right-handed alpha
Helix 5
AA5
B
35 38Right-handed 310
Helix 6
AA6
B
39 59Right-handed alpha
Helix 7
AA7
B
75 80Right-handed alpha
Helix 8
AA8
B
83 112Right-handed alpha
Helix 9
AA9
B
119 140Right-handed alpha
Helix 10
AB1
B
146 159Right-handed alpha
Helix 11
AB2
B
160 162Right-handed 310
Helix 12
AB3
B
191 225Right-handed alpha
Helix 13
AB4
B
245 250Right-handed alpha
Helix 14
AB5
B
250 272Right-handed alpha
Helix 15
AB6
B
278 282Right-handed 310
Helix 16
AB7
B
297 299Right-handed 310
Helix 17
AB8
B
300 307Right-handed alpha
Helix 18
AB9
B
312 326Right-handed alpha
Helix 19
AC1
B
329 334Right-handed alpha
Helix 20
AC2
B
344 365Right-handed alpha
Helix 21
AC3
B
370 390Right-handed alpha
Helix 22
AC4
B
390 400Right-handed alpha
Helix 23
AC5
C
4 25Right-handed alpha
Helix 24
AC6
C
52 56Right-handed 310
Helix 25
AC7
C
57 70Right-handed alpha
Helix 26
AC8
C
145 151Right-handed alpha
Helix 27
AC9
C
151 159Right-handed alpha
Helix 28
AD1
C
161 166Right-handed alpha
Helix 29
AD2
C
183 197Right-handed alpha
Helix 30
AD3
C
203 238Right-handed alpha
Helix 31
AD4
D
11 33Right-handed alpha
Helix 32
AD5
D
50 52Right-handed 310
Helix 33
AD6
E
8 16Right-handed alpha
Helix 34
AD7
E
16 25Right-handed alpha
Helix 35
AD8
E
35 38Right-handed 310
Helix 36
AD9
E
39 59Right-handed alpha
Helix 37
AE1
E
75 80Right-handed alpha
Helix 38
AE2
E
83 112Right-handed alpha
Helix 39
AE3
E
119 140Right-handed alpha
Helix 40
AE4
E
146 159Right-handed alpha
Helix 41
AE5
E
160 162Right-handed 310
Helix 42
AE6
E
191 225Right-handed alpha
Helix 43
AE7
E
245 250Right-handed alpha
Helix 44
AE8
E
250 272Right-handed alpha
Helix 45
AE9
E
278 282Right-handed 310
Helix 46
AF1
E
297 299Right-handed 310
Helix 47
AF2
E
300 307Right-handed alpha
Helix 48
AF3
E
312 326Right-handed alpha
Helix 49
AF4
E
329 334Right-handed alpha
Helix 50
AF5
E
344 365Right-handed alpha
Helix 51
AF6
E
370 390Right-handed alpha
Helix 52
AF7
E
390 400Right-handed alpha
Helix 53
AF8
F
4 25Right-handed alpha
Helix 54
AF9
F
52 56Right-handed 310
Helix 55
AG1
F
57 70Right-handed alpha
Helix 56
AG2
F
145 151Right-handed alpha
Helix 57
AG3
F
151 159Right-handed alpha
Helix 58
AG4
F
161 166Right-handed alpha
Helix 59
AG5
F
183 197Right-handed alpha
Helix 60
AG6
F
203 238Right-handed alpha
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There are 8 sheets in PDB entry 6KLS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 48first strand
Strand 2
A
168 169anti-parallel
Strand 3
A
164 165anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 60first strand
Strand 2
A
67 71anti-parallel
Strand 3
A
104 105anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
133 135first strand
Strand 2
A
140 142anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
102 104first strand
Strand 2
C
109 114anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
47 48first strand
Strand 2
D
168 169anti-parallel
Strand 3
D
164 165anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
56 60first strand
Strand 2
D
67 71anti-parallel
Strand 3
D
104 105anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
133 135first strand
Strand 2
D
140 142anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
102 104first strand
Strand 2
F
109 114anti-parallel
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