Analysis of interatomic Contacts of Structural Units in PDB entry:
6KM7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6KM7 entry

There are 4 chains in PDB entry 6KM7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 12	ASN 324
B	ASN 12	GLN 323
C	SER 396	LYS 474
D	LYS 397	LYS 474

There are 2 helices in PDB entry 6KM7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	227	234	Right-handed alpha
Helix 2	AA2	B	227	234	Right-handed alpha

There are 14 sheets in PDB entry 6KM7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	16	21	first strand
Strand 2	A	317	322	anti-parallel
Strand 3	A	310	314	anti-parallel
Strand 4	A	298	303	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	32	first strand
Strand 2	A	38	43	anti-parallel
Strand 3	A	47	52	anti-parallel
Strand 4	A	57	63	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	69	74	first strand
Strand 2	A	80	85	anti-parallel
Strand 3	A	89	94	anti-parallel
Strand 4	A	100	105	anti-parallel
Strand 5	C	453	456	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	110	116	first strand
Strand 2	A	119	127	anti-parallel
Strand 3	A	133	136	anti-parallel
Strand 4	A	141	144	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	155	159	first strand
Strand 2	A	165	170	anti-parallel
Strand 3	A	174	179	anti-parallel
Strand 4	A	185	190	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	201	206	first strand
Strand 2	A	212	217	anti-parallel
Strand 3	A	222	226	anti-parallel
Strand 4	A	243	245	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	254	259	first strand
Strand 2	A	265	270	anti-parallel
Strand 3	A	275	280	anti-parallel
Strand 4	A	286	291	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	16	21	first strand
Strand 2	B	317	322	anti-parallel
Strand 3	B	309	314	anti-parallel
Strand 4	B	298	303	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	32	first strand
Strand 2	B	38	43	anti-parallel
Strand 3	B	47	52	anti-parallel
Strand 4	B	57	63	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	69	74	first strand
Strand 2	B	80	85	anti-parallel
Strand 3	B	89	94	anti-parallel
Strand 4	B	100	105	anti-parallel
Strand 5	D	454	456	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	110	116	first strand
Strand 2	B	119	127	anti-parallel
Strand 3	B	133	136	anti-parallel
Strand 4	B	141	144	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	155	159	first strand
Strand 2	B	165	170	anti-parallel
Strand 3	B	174	179	anti-parallel
Strand 4	B	185	190	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	201	206	first strand
Strand 2	B	212	217	anti-parallel
Strand 3	B	222	226	anti-parallel
Strand 4	B	243	245	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	254	259	first strand
Strand 2	B	265	270	anti-parallel
Strand 3	B	275	280	anti-parallel
Strand 4	B	286	291	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6KM7

Analysis of interatomic Contacts of Structural Units in PDB entry:
6KM7