Analysis of interatomic Contacts of Structural Units in PDB entry:
6KM8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6KM8 entry

There is 1 chain in PDB entry 6KM8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 46GLY 428
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 6KM8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
193 202Right-handed alpha
Helix 2
AA2
A
204 209Right-handed alpha
Helix 3
AA3
A
275 282Right-handed alpha
Helix 4
AA4
A
390 394Right-handed 310
Helix 5
AA5
A
395 403Right-handed alpha
Helix 6
AA6
A
409 415Right-handed alpha
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There are 6 sheets in PDB entry 6KM8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
50 51first strand
Strand 2
A
348 351anti-parallel
Strand 3
A
305 313anti-parallel
Strand 4
A
367 374anti-parallel
Strand 5
A
284 290anti-parallel
Strand 6
A
265 270anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 58first strand
Strand 2
A
65 70anti-parallel
Strand 3
A
87 93anti-parallel
Strand 4
A
161 168anti-parallel
Strand 5
A
106 112anti-parallel
Strand 6
A
141 144anti-parallel
Strand 7
A
250 251anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 136first strand
Strand 2
A
117 123anti-parallel
Strand 3
A
149 154anti-parallel
Strand 4
A
97 104anti-parallel
Strand 5
A
177 179anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 136first strand
Strand 2
A
117 123anti-parallel
Strand 3
A
149 154anti-parallel
Strand 4
A
97 104anti-parallel
Strand 5
A
222 224anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
337 343first strand
Strand 2
A
315 321anti-parallel
Strand 3
A
357 360anti-parallel
Strand 4
A
294 301anti-parallel
Strand 5
A
381 383anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
337 343first strand
Strand 2
A
315 321anti-parallel
Strand 3
A
357 360anti-parallel
Strand 4
A
294 301anti-parallel
Strand 5
A
422 424anti-parallel
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