Analysis of interatomic Contacts of Structural Units in PDB entry:
6KM9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6KM9 entry

There are 2 chains in PDB entry 6KM9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 87ASN 934
B
 ASP 87TYR 512
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 75 helices in PDB entry 6KM9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
87 108Right-handed alpha
Helix 2
AA2
A
121 130Right-handed 310
Helix 3
AA3
A
132 137Right-handed alpha
Helix 4
AA4
A
154 166Right-handed alpha
Helix 5
AA5
A
178 193Right-handed alpha
Helix 6
AA6
A
199 224Right-handed alpha
Helix 7
AA7
A
237 252Right-handed alpha
Helix 8
AA8
A
265 273Right-handed alpha
Helix 9
AA9
A
277 286Right-handed alpha
Helix 10
AB1
A
298 302Right-handed 310
Helix 11
AB2
A
328 345Right-handed alpha
Helix 12
AB3
A
360 366Right-handed alpha
Helix 13
AB4
A
367 376Right-handed alpha
Helix 14
AB5
A
401 406Right-handed alpha
Helix 15
AB6
A
410 419Right-handed 310
Helix 16
AB7
A
429 448Right-handed alpha
Helix 17
AB8
A
468 472Right-handed 310
Helix 18
AB9
A
473 482Right-handed alpha
Helix 19
AC1
A
485 497Right-handed alpha
Helix 20
AC2
A
501 519Right-handed alpha
Helix 21
AC3
A
553 566Right-handed alpha
Helix 22
AC4
A
574 589Right-handed alpha
Helix 23
AC5
A
595 610Right-handed alpha
Helix 24
AC6
A
643 648Right-handed 310
Helix 25
AC7
A
664 678Right-handed alpha
Helix 26
AC8
A
689 695Right-handed 310
Helix 27
AC9
A
696 703Right-handed alpha
Helix 28
AD1
A
706 712Right-handed alpha
Helix 29
AD2
A
736 743Right-handed alpha
Helix 30
AD3
A
756 770Right-handed alpha
Helix 31
AD4
A
782 786Right-handed 310
Helix 32
AD5
A
793 800Right-handed alpha
Helix 33
AD6
A
813 817Right-handed 310
Helix 34
AD7
A
826 838Right-handed alpha
Helix 35
AD8
A
855 864Right-handed alpha
Helix 36
AD9
A
884 896Right-handed alpha
Helix 37
AE1
A
917 934Right-handed alpha
Helix 38
AE2
B
88 104Right-handed alpha
Helix 39
AE3
B
105 107Right-handed 310
Helix 40
AE4
B
121 130Right-handed 310
Helix 41
AE5
B
132 137Right-handed alpha
Helix 42
AE6
B
154 166Right-handed alpha
Helix 43
AE7
B
178 192Right-handed alpha
Helix 44
AE8
B
199 224Right-handed alpha
Helix 45
AE9
B
237 252Right-handed alpha
Helix 46
AF1
B
265 273Right-handed alpha
Helix 47
AF2
B
277 286Right-handed alpha
Helix 48
AF3
B
298 302Right-handed 310
Helix 49
AF4
B
328 345Right-handed alpha
Helix 50
AF5
B
360 366Right-handed alpha
Helix 51
AF6
B
366 376Right-handed alpha
Helix 52
AF7
B
401 406Right-handed alpha
Helix 53
AF8
B
412 419Right-handed 310
Helix 54
AF9
B
429 448Right-handed alpha
Helix 55
AG1
B
468 472Right-handed 310
Helix 56
AG2
B
473 481Right-handed alpha
Helix 57
AG3
B
485 497Right-handed alpha
Helix 58
AG4
B
501 519Right-handed alpha
Helix 59
AG5
B
553 566Right-handed alpha
Helix 60
AG6
B
574 589Right-handed alpha
Helix 61
AG7
B
595 610Right-handed alpha
Helix 62
AG8
B
643 648Right-handed 310
Helix 63
AG9
B
664 678Right-handed alpha
Helix 64
AH1
B
689 695Right-handed 310
Helix 65
AH2
B
696 703Right-handed alpha
Helix 66
AH3
B
706 712Right-handed alpha
Helix 67
AH4
B
736 744Right-handed alpha
Helix 68
AH5
B
756 770Right-handed alpha
Helix 69
AH6
B
782 786Right-handed 310
Helix 70
AH7
B
793 800Right-handed alpha
Helix 71
AH8
B
813 817Right-handed 310
Helix 72
AH9
B
826 838Right-handed alpha
Helix 73
AI1
B
855 864Right-handed alpha
Helix 74
AI2
B
884 896Right-handed alpha
Helix 75
AI3
B
917 934Right-handed alpha
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There are 10 sheets in PDB entry 6KM9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 141first strand
Strand 2
A
151 153anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
169 172first strand
Strand 2
A
422 426anti-parallel
Strand 3
A
451 456parallel
Strand 4
A
387 392parallel
Strand 5
A
352 359parallel
Strand 6
A
256 260parallel
Strand 7
A
313 319parallel
Strand 8
A
304 310anti-parallel
Strand 9
A
526 527anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
655 659first strand
Strand 2
A
614 618parallel
Strand 3
A
682 686parallel
Strand 4
A
718 722parallel
Strand 5
A
776 780parallel
Strand 6
A
750 752parallel
Strand 7
A
850 852anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
633 634first strand
Strand 2
A
641 642anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
843 847first strand
Strand 2
A
819 823parallel
Strand 3
A
871 879parallel
Strand 4
A
901 907parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
139 141first strand
Strand 2
B
151 153anti-parallel
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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
169 172first strand
Strand 2
B
422 426anti-parallel
Strand 3
B
451 456parallel
Strand 4
B
387 392parallel
Strand 5
B
352 359parallel
Strand 6
B
256 260parallel
Strand 7
B
313 319parallel
Strand 8
B
304 310anti-parallel
Strand 9
B
526 527anti-parallel
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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
655 659first strand
Strand 2
B
614 618parallel
Strand 3
B
682 686parallel
Strand 4
B
718 722parallel
Strand 5
B
776 780parallel
Strand 6
B
750 752parallel
Strand 7
B
850 852anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
633 634first strand
Strand 2
B
641 642anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
805 806first strand
Strand 2
B
843 848anti-parallel
Strand 3
B
819 823parallel
Strand 4
B
871 879parallel
Strand 5
B
901 907parallel
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