Analysis of interatomic Contacts of Structural Units in PDB entry:
6KMA

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6KMA entry

There are 2 chains in PDB entry 6KMA (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 86	VAL 935
B	ASP 87	GLU 520

There are148 helices in PDB entry 6KMA. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	87	104	Right-handed alpha
Helix 2	AA2	A	105	108	Right-handed 310
Helix 3	AA3	A	121	130	Right-handed 310
Helix 4	AA4	A	132	138	Right-handed alpha
Helix 5	AA5	A	154	166	Right-handed alpha
Helix 6	AA6	A	178	193	Right-handed alpha
Helix 7	AA7	A	199	224	Right-handed alpha
Helix 8	AA8	A	237	252	Right-handed alpha
Helix 9	AA9	A	265	273	Right-handed alpha
Helix 10	AB1	A	277	287	Right-handed alpha
Helix 11	AB2	A	298	302	Right-handed 310
Helix 12	AB3	A	328	345	Right-handed alpha
Helix 13	AB4	A	360	366	Right-handed alpha
Helix 14	AB5	A	366	375	Right-handed alpha
Helix 15	AB6	A	401	406	Right-handed alpha
Helix 16	AB7	A	410	419	Right-handed 310
Helix 17	AB8	A	429	448	Right-handed alpha
Helix 18	AB9	A	473	482	Right-handed alpha
Helix 19	AC1	A	485	497	Right-handed alpha
Helix 20	AC2	A	501	519	Right-handed alpha
Helix 21	AC3	A	553	565	Right-handed alpha
Helix 22	AC4	A	574	589	Right-handed alpha
Helix 23	AC5	A	595	610	Right-handed alpha
Helix 24	AC6	A	643	648	Right-handed 310
Helix 25	AC7	A	664	678	Right-handed alpha
Helix 26	AC8	A	689	695	Right-handed 310
Helix 27	AC9	A	696	703	Right-handed alpha
Helix 28	AD1	A	706	712	Right-handed alpha
Helix 29	AD2	A	736	744	Right-handed alpha
Helix 30	AD3	A	756	770	Right-handed alpha
Helix 31	AD4	A	782	786	Right-handed 310
Helix 32	AD5	A	793	800	Right-handed alpha
Helix 33	AD6	A	813	817	Right-handed 310
Helix 34	AD7	A	826	838	Right-handed alpha
Helix 35	AD8	A	855	864	Right-handed alpha
Helix 36	AD9	A	884	896	Right-handed alpha
Helix 37	AE1	A	917	934	Right-handed alpha
Helix 38	AE2	B	88	104	Right-handed alpha
Helix 39	AE3	B	105	108	Right-handed 310
Helix 40	AE4	B	121	130	Right-handed 310
Helix 41	AE5	B	132	138	Right-handed alpha
Helix 42	AE6	B	154	166	Right-handed alpha
Helix 43	AE7	B	178	193	Right-handed alpha
Helix 44	AE8	B	199	224	Right-handed alpha
Helix 45	AE9	B	237	252	Right-handed alpha
Helix 46	AF1	B	265	273	Right-handed alpha
Helix 47	AF2	B	277	287	Right-handed alpha
Helix 48	AF3	B	298	302	Right-handed 310
Helix 49	AF4	B	328	345	Right-handed alpha
Helix 50	AF5	B	360	366	Right-handed alpha
Helix 51	AF6	B	366	375	Right-handed alpha
Helix 52	AF7	B	401	406	Right-handed alpha
Helix 53	AF8	B	410	419	Right-handed 310
Helix 54	AF9	B	429	448	Right-handed alpha
Helix 55	AG1	B	473	482	Right-handed alpha
Helix 56	AG2	B	485	497	Right-handed alpha
Helix 57	AG3	B	501	519	Right-handed alpha
Helix 58	AG4	B	553	565	Right-handed alpha
Helix 59	AG5	B	574	589	Right-handed alpha
Helix 60	AG6	B	595	610	Right-handed alpha
Helix 61	AG7	B	643	648	Right-handed 310
Helix 62	AG8	B	664	678	Right-handed alpha
Helix 63	AG9	B	689	695	Right-handed 310
Helix 64	AH1	B	696	703	Right-handed alpha
Helix 65	AH2	B	706	712	Right-handed alpha
Helix 66	AH3	B	736	744	Right-handed alpha
Helix 67	AH4	B	756	770	Right-handed alpha
Helix 68	AH5	B	782	786	Right-handed 310
Helix 69	AH6	B	793	800	Right-handed alpha
Helix 70	AH7	B	813	817	Right-handed 310
Helix 71	AH8	B	826	838	Right-handed alpha
Helix 72	AH9	B	855	864	Right-handed alpha
Helix 73	AI1	B	884	896	Right-handed alpha
Helix 74	AI2	B	917	934	Right-handed alpha
Helix 75	AI3	C	87	104	Right-handed alpha
Helix 76	AI4	C	105	108	Right-handed 310
Helix 77	AI5	C	121	130	Right-handed 310
Helix 78	AI6	C	132	138	Right-handed alpha
Helix 79	AI7	C	154	166	Right-handed alpha
Helix 80	AI8	C	178	193	Right-handed alpha
Helix 81	AI9	C	199	224	Right-handed alpha
Helix 82	AJ1	C	237	252	Right-handed alpha
Helix 83	AJ2	C	265	273	Right-handed alpha
Helix 84	AJ3	C	277	287	Right-handed alpha
Helix 85	AJ4	C	298	302	Right-handed 310
Helix 86	AJ5	C	328	345	Right-handed alpha
Helix 87	AJ6	C	360	366	Right-handed alpha
Helix 88	AJ7	C	366	375	Right-handed alpha
Helix 89	AJ8	C	401	406	Right-handed alpha
Helix 90	AJ9	C	410	419	Right-handed 310
Helix 91	AK1	C	429	448	Right-handed alpha
Helix 92	AK2	C	473	482	Right-handed alpha
Helix 93	AK3	C	485	497	Right-handed alpha
Helix 94	AK4	C	501	519	Right-handed alpha
Helix 95	AK5	C	553	565	Right-handed alpha
Helix 96	AK6	C	574	589	Right-handed alpha
Helix 97	AK7	C	595	610	Right-handed alpha
Helix 98	AK8	C	643	648	Right-handed 310
Helix 99	AK9	C	664	678	Right-handed alpha
Helix 100	AL1	C	689	695	Right-handed 310
Helix 101	AL2	C	696	703	Right-handed alpha
Helix 102	AL3	C	706	712	Right-handed alpha
Helix 103	AL4	C	736	744	Right-handed alpha
Helix 104	AL5	C	756	770	Right-handed alpha
Helix 105	AL6	C	782	787	Right-handed 310
Helix 106	AL7	C	793	800	Right-handed alpha
Helix 107	AL8	C	813	817	Right-handed 310
Helix 108	AL9	C	826	838	Right-handed alpha
Helix 109	AM1	C	855	864	Right-handed alpha
Helix 110	AM2	C	884	896	Right-handed alpha
Helix 111	AM3	C	917	934	Right-handed alpha
Helix 112	AM4	D	88	104	Right-handed alpha
Helix 113	AM5	D	105	108	Right-handed 310
Helix 114	AM6	D	121	130	Right-handed 310
Helix 115	AM7	D	132	138	Right-handed alpha
Helix 116	AM8	D	154	166	Right-handed alpha
Helix 117	AM9	D	178	193	Right-handed alpha
Helix 118	AN1	D	199	224	Right-handed alpha
Helix 119	AN2	D	237	252	Right-handed alpha
Helix 120	AN3	D	265	273	Right-handed alpha
Helix 121	AN4	D	277	287	Right-handed alpha
Helix 122	AN5	D	298	302	Right-handed 310
Helix 123	AN6	D	328	345	Right-handed alpha
Helix 124	AN7	D	360	366	Right-handed alpha
Helix 125	AN8	D	366	375	Right-handed alpha
Helix 126	AN9	D	401	406	Right-handed alpha
Helix 127	AO1	D	410	419	Right-handed 310
Helix 128	AO2	D	429	448	Right-handed alpha
Helix 129	AO3	D	473	482	Right-handed alpha
Helix 130	AO4	D	485	497	Right-handed alpha
Helix 131	AO5	D	501	519	Right-handed alpha
Helix 132	AO6	D	553	565	Right-handed alpha
Helix 133	AO7	D	574	589	Right-handed alpha
Helix 134	AO8	D	595	610	Right-handed alpha
Helix 135	AO9	D	643	648	Right-handed 310
Helix 136	AP1	D	664	678	Right-handed alpha
Helix 137	AP2	D	689	695	Right-handed 310
Helix 138	AP3	D	696	703	Right-handed alpha
Helix 139	AP4	D	706	712	Right-handed alpha
Helix 140	AP5	D	736	744	Right-handed alpha
Helix 141	AP6	D	756	770	Right-handed alpha
Helix 142	AP7	D	782	786	Right-handed 310
Helix 143	AP8	D	793	800	Right-handed alpha
Helix 144	AP9	D	813	817	Right-handed 310
Helix 145	AQ1	D	826	838	Right-handed alpha
Helix 146	AQ2	D	855	864	Right-handed alpha
Helix 147	AQ3	D	884	896	Right-handed alpha
Helix 148	AQ4	D	917	934	Right-handed alpha

There are 20 sheets in PDB entry 6KMA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	139	141	first strand
Strand 2	A	151	153	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	172	first strand
Strand 2	A	422	426	anti-parallel
Strand 3	A	451	456	parallel
Strand 4	A	387	392	parallel
Strand 5	A	352	359	parallel
Strand 6	A	256	260	parallel
Strand 7	A	313	319	parallel
Strand 8	A	304	310	anti-parallel
Strand 9	A	526	527	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	655	659	first strand
Strand 2	A	614	618	parallel
Strand 3	A	682	686	parallel
Strand 4	A	718	722	parallel
Strand 5	A	776	780	parallel
Strand 6	A	750	752	parallel
Strand 7	A	850	852	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	633	634	first strand
Strand 2	A	641	642	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	805	806	first strand
Strand 2	A	843	848	anti-parallel
Strand 3	A	819	823	parallel
Strand 4	A	871	879	parallel
Strand 5	A	901	907	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	139	141	first strand
Strand 2	B	151	153	anti-parallel

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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	169	172	first strand
Strand 2	B	422	426	anti-parallel
Strand 3	B	451	456	parallel
Strand 4	B	387	392	parallel
Strand 5	B	352	359	parallel
Strand 6	B	256	260	parallel
Strand 7	B	315	319	parallel
Strand 8	B	304	308	anti-parallel
Strand 9	B	526	527	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	655	659	first strand
Strand 2	B	614	618	parallel
Strand 3	B	682	686	parallel
Strand 4	B	718	722	parallel
Strand 5	B	776	780	parallel
Strand 6	B	750	752	parallel
Strand 7	B	850	852	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	633	634	first strand
Strand 2	B	641	642	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	805	806	first strand
Strand 2	B	843	848	anti-parallel
Strand 3	B	819	823	parallel
Strand 4	B	871	879	parallel
Strand 5	B	901	907	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	139	141	first strand
Strand 2	C	151	153	anti-parallel

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There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	169	172	first strand
Strand 2	C	422	426	anti-parallel
Strand 3	C	451	456	parallel
Strand 4	C	387	392	parallel
Strand 5	C	352	359	parallel
Strand 6	C	256	260	parallel
Strand 7	C	315	319	parallel
Strand 8	C	304	308	anti-parallel
Strand 9	C	526	527	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	655	659	first strand
Strand 2	C	614	618	parallel
Strand 3	C	682	686	parallel
Strand 4	C	718	722	parallel
Strand 5	C	776	780	parallel
Strand 6	C	750	752	parallel
Strand 7	C	850	852	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	633	634	first strand
Strand 2	C	641	642	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	805	806	first strand
Strand 2	C	843	848	anti-parallel
Strand 3	C	819	823	parallel
Strand 4	C	871	879	parallel
Strand 5	C	901	907	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	139	141	first strand
Strand 2	D	151	153	anti-parallel

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There are 9 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	169	172	first strand
Strand 2	D	422	426	anti-parallel
Strand 3	D	451	456	parallel
Strand 4	D	387	392	parallel
Strand 5	D	352	359	parallel
Strand 6	D	256	260	parallel
Strand 7	D	315	319	parallel
Strand 8	D	304	308	anti-parallel
Strand 9	D	526	527	anti-parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	655	659	first strand
Strand 2	D	614	618	parallel
Strand 3	D	682	686	parallel
Strand 4	D	718	722	parallel
Strand 5	D	776	780	parallel
Strand 6	D	750	752	parallel
Strand 7	D	850	852	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	633	634	first strand
Strand 2	D	641	642	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	805	806	first strand
Strand 2	D	843	848	anti-parallel
Strand 3	D	819	823	parallel
Strand 4	D	871	879	parallel
Strand 5	D	901	907	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6KMA

Analysis of interatomic Contacts of Structural Units in PDB entry:
6KMA