Analysis of interatomic Contacts of Structural Units in PDB entry:
6KMB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6KMB entry

There are 4 chains in PDB entry 6KMB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 1249SER 1358
B
 LEU 1249HIS 1357
C
 GLY 1250HIS 1357
D
 ILE 1251SER 1358
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 6KMB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1250 1264Right-handed alpha
Helix 2
AA2
A
1275 1279Right-handed 310
Helix 3
AA3
A
1289 1294Right-handed alpha
Helix 4
AA4
A
1299 1307Right-handed alpha
Helix 5
AA5
A
1314 1333Right-handed alpha
Helix 6
AA6
A
1337 1356Right-handed alpha
Helix 7
AA7
B
1250 1264Right-handed alpha
Helix 8
AA8
B
1275 1279Right-handed 310
Helix 9
AA9
B
1287 1294Right-handed alpha
Helix 10
AB1
B
1299 1307Right-handed alpha
Helix 11
AB2
B
1314 1333Right-handed alpha
Helix 12
AB3
B
1337 1356Right-handed alpha
Helix 13
AB4
C
1251 1264Right-handed alpha
Helix 14
AB5
C
1275 1279Right-handed 310
Helix 15
AB6
C
1287 1294Right-handed alpha
Helix 16
AB7
C
1299 1309Right-handed alpha
Helix 17
AB8
C
1314 1333Right-handed alpha
Helix 18
AB9
C
1337 1356Right-handed alpha
Helix 19
AC1
D
1252 1263Right-handed alpha
Helix 20
AC2
D
1275 1279Right-handed 310
Helix 21
AC3
D
1287 1294Right-handed alpha
Helix 22
AC4
D
1299 1309Right-handed alpha
Helix 23
AC5
D
1314 1333Right-handed alpha
Helix 24
AC6
D
1337 1357Right-handed alpha
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There are no sheets in PDB entry 6KMB
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il