Analysis of interatomic Contacts of Structural Units in PDB entry:
6KMF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6KMF entry

There are 4 chains in PDB entry 6KMF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 47	SER 362
B	ALA 47	TRP 383
C	ALA 47	TRP 383
D	ALA 363	TRP 383

There are 13 helices in PDB entry 6KMF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	109	114	Right-handed alpha
Helix 2	AA2	A	121	127	Right-handed 310
Helix 3	AA3	A	183	187	Right-handed 310
Helix 4	AA4	A	291	293	Right-handed 310
Helix 5	AA5	A	294	299	Right-handed alpha
Helix 6	AA6	B	109	115	Right-handed alpha
Helix 7	AA7	B	121	125	Right-handed 310
Helix 8	AA8	B	294	301	Right-handed alpha
Helix 9	AA9	C	109	114	Right-handed alpha
Helix 10	AB1	C	121	126	Right-handed 310
Helix 11	AB2	C	183	187	Right-handed 310
Helix 12	AB3	C	294	299	Right-handed alpha
Helix 13	AB4	C	300	302	Right-handed 310

There are 20 sheets in PDB entry 6KMF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	70	74	first strand
Strand 2	A	60	65	anti-parallel
Strand 3	A	93	98	anti-parallel
Strand 4	A	132	133	anti-parallel
Strand 5	A	164	168	anti-parallel
Strand 6	B	363	371	parallel
Strand 7	A	81	87	anti-parallel

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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	70	74	first strand
Strand 2	A	60	65	anti-parallel
Strand 3	A	93	98	anti-parallel
Strand 4	A	132	133	anti-parallel
Strand 5	A	164	168	anti-parallel
Strand 6	B	363	371	parallel
Strand 7	A	146	148	parallel
Strand 8	A	157	158	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	118	119	first strand
Strand 2	A	205	206	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	256	260	first strand
Strand 2	A	171	177	anti-parallel
Strand 3	A	340	346	parallel
Strand 4	B	379	382	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	190	196	first strand
Strand 2	A	276	285	anti-parallel
Strand 3	A	309	315	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	70	77	first strand
Strand 2	B	59	65	anti-parallel
Strand 3	B	93	98	anti-parallel
Strand 4	B	132	133	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	81	82	first strand
Strand 2	C	367	371	anti-parallel
Strand 3	B	164	166	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	91	first strand
Strand 2	B	140	141	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	118	119	first strand
Strand 2	B	205	206	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	147	first strand
Strand 2	B	157	158	parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	257	260	first strand
Strand 2	B	171	177	anti-parallel
Strand 3	B	339	347	parallel
Strand 4	C	375	383	parallel
Strand 5	B	323	325	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	190	192	first strand
Strand 2	B	276	285	anti-parallel
Strand 3	B	309	315	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	263	264	first strand
Strand 2	B	334	335	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	70	73	first strand
Strand 2	C	60	65	anti-parallel
Strand 3	C	93	98	anti-parallel
Strand 4	C	132	133	anti-parallel
Strand 5	C	164	168	anti-parallel
Strand 6	D	364	371	parallel
Strand 7	C	81	86	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	90	91	first strand
Strand 2	C	140	141	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	146	147	first strand
Strand 2	C	157	158	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	256	260	first strand
Strand 2	C	171	177	anti-parallel
Strand 3	C	339	346	parallel
Strand 4	D	375	382	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	190	196	first strand
Strand 2	C	276	285	anti-parallel
Strand 3	C	309	315	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	221	222	first strand
Strand 2	C	238	239	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	263	264	first strand
Strand 2	C	334	335	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6KMF

Analysis of interatomic Contacts of Structural Units in PDB entry:
6KMF