Analysis of interatomic Contacts of Structural Units in PDB entry:
6KMO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6KMO entry

There are 2 chains in PDB entry 6KMO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 3LYS 337
B
 THR 3LYS 337
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 6KMO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 9Right-handed alpha
Helix 2
AA2
A
10 14Right-handed 310
Helix 3
AA3
A
29 42Right-handed alpha
Helix 4
AA4
A
46 50Right-handed 310
Helix 5
AA5
A
51 64Right-handed alpha
Helix 6
AA6
A
114 130Right-handed alpha
Helix 7
AA7
A
147 164Right-handed alpha
Helix 8
AA8
A
165 167Right-handed 310
Helix 9
AA9
A
180 196Right-handed alpha
Helix 10
AB1
A
217 223Right-handed alpha
Helix 11
AB2
A
230 242Right-handed alpha
Helix 12
AB3
A
244 249Right-handed alpha
Helix 13
AB4
A
254 258Right-handed 310
Helix 14
AB5
A
259 264Right-handed alpha
Helix 15
AB6
A
279 293Right-handed alpha
Helix 16
AB7
A
312 316Right-handed 310
Helix 17
AB8
A
318 336Right-handed alpha
Helix 18
AB9
B
4 9Right-handed alpha
Helix 19
AC1
B
10 14Right-handed 310
Helix 20
AC2
B
29 42Right-handed alpha
Helix 21
AC3
B
46 50Right-handed 310
Helix 22
AC4
B
51 64Right-handed alpha
Helix 23
AC5
B
114 130Right-handed alpha
Helix 24
AC6
B
147 164Right-handed alpha
Helix 25
AC7
B
165 167Right-handed 310
Helix 26
AC8
B
180 196Right-handed alpha
Helix 27
AC9
B
217 223Right-handed alpha
Helix 28
AD1
B
230 242Right-handed alpha
Helix 29
AD2
B
244 249Right-handed alpha
Helix 30
AD3
B
254 258Right-handed 310
Helix 31
AD4
B
259 264Right-handed alpha
Helix 32
AD5
B
279 293Right-handed alpha
Helix 33
AD6
B
312 316Right-handed 310
Helix 34
AD7
B
318 336Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 6KMO.

There are 16 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 80first strand
Strand 2
A
83 92anti-parallel
Strand 3
A
132 136anti-parallel
Strand 4
A
99 105parallel
Strand 5
A
169 179parallel
Strand 6
A
203 207parallel
Strand 7
A
269 276parallel
Strand 8
A
297 306parallel
Strand 9
B
297 306anti-parallel
Strand 10
B
269 276parallel
Strand 11
B
203 207parallel
Strand 12
B
169 179parallel
Strand 13
B
99 105parallel
Strand 14
B
132 136parallel
Strand 15
B
84 92anti-parallel
Strand 16
B
71 79anti-parallel
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