Analysis of interatomic Contacts of Structural Units in PDB entry:
6KMS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6KMS entry

There are 4 chains in PDB entry 6KMS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 ASN 5SER 214
A
 MSE 0GLU 120
B
 MSE 0GLU 124
D
 PHE 6SER 214
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 30 helices in PDB entry 6KMS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
16 20Right-handed 310
Helix 2
AA2
C
26 39Right-handed alpha
Helix 3
AA3
C
41 46Right-handed 310
Helix 4
AA4
C
57 68Right-handed alpha
Helix 5
AA5
C
79 93Right-handed alpha
Helix 6
AA6
C
129 133Right-handed 310
Helix 7
AA7
C
138 143Right-handed alpha
Helix 8
AA8
C
145 148Right-handed 310
Helix 9
AA9
C
149 156Right-handed alpha
Helix 10
AB1
C
158 162Right-handed alpha
Helix 11
AB2
C
174 177Right-handed 310
Helix 12
AB3
C
178 188Right-handed alpha
Helix 13
AB4
A
3 7Right-handed alpha
Helix 14
AB5
A
16 21Right-handed 310
Helix 15
AB6
A
38 46Right-handed alpha
Helix 16
AB7
A
50 61Right-handed alpha
Helix 17
AB8
A
77 90Right-handed alpha
Helix 18
AB9
B
2 7Right-handed alpha
Helix 19
AC1
B
16 20Right-handed 310
Helix 20
AC2
B
38 46Right-handed alpha
Helix 21
AC3
B
50 61Right-handed alpha
Helix 22
AC4
B
77 90Right-handed alpha
Helix 23
AC5
D
26 39Right-handed alpha
Helix 24
AC6
D
57 68Right-handed alpha
Helix 25
AC7
D
79 93Right-handed alpha
Helix 26
AC8
D
137 141Right-handed 310
Helix 27
AC9
D
145 148Right-handed 310
Helix 28
AD1
D
149 156Right-handed alpha
Helix 29
AD2
D
157 162Right-handed alpha
Helix 30
AD3
D
178 189Right-handed alpha
Back to top of page

There are 7 sheets in PDB entry 6KMS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
97 101first strand
Strand 2
C
72 77parallel
Strand 3
C
48 52parallel
Strand 4
C
116 121parallel
Strand 5
C
163 173parallel
Strand 6
C
204 213anti-parallel
Strand 7
C
191 194anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
97 101first strand
Strand 2
C
72 77parallel
Strand 3
C
48 52parallel
Strand 4
C
116 121parallel
Strand 5
C
163 173parallel
Strand 6
C
204 213anti-parallel
Strand 7
C
199 201anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1 2first strand
Strand 2
A
91 99anti-parallel
Strand 3
A
24 32anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1 2first strand
Strand 2
A
91 99anti-parallel
Strand 3
A
106 110anti-parallel
Strand 4
A
113 114anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
24 32first strand
Strand 2
B
91 99anti-parallel
Strand 3
B
106 110anti-parallel
Strand 4
B
113 114anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
97 100first strand
Strand 2
D
72 76parallel
Strand 3
D
48 50parallel
Strand 4
D
116 121parallel
Strand 5
D
163 173parallel
Strand 6
D
207 208anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
97 100first strand
Strand 2
D
72 76parallel
Strand 3
D
48 50parallel
Strand 4
D
116 121parallel
Strand 5
D
163 173parallel
Strand 6
D
211 212anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il