Analysis of interatomic Contacts of Structural Units in PDB entry:
6KMT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6KMT entry

There are 4 chains in PDB entry 6KMT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 101ASN 373
B
 THR 101ASN 373
C
 THR 101ASN 373
D
 THR 101ASN 373
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 6KMT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
106 117Right-handed alpha
Helix 2
AA2
A
150 165Right-handed alpha
Helix 3
AA3
A
176 189Right-handed alpha
Helix 4
AA4
A
190 196Right-handed 310
Helix 5
AA5
A
227 234Right-handed alpha
Helix 6
AA6
A
239 243Right-handed 310
Helix 7
AA7
A
304 308Right-handed 310
Helix 8
AA8
A
316 330Right-handed alpha
Helix 9
AA9
A
334 349Right-handed alpha
Helix 10
AB1
B
106 117Right-handed alpha
Helix 11
AB2
B
150 165Right-handed alpha
Helix 12
AB3
B
176 189Right-handed alpha
Helix 13
AB4
B
190 196Right-handed 310
Helix 14
AB5
B
227 235Right-handed alpha
Helix 15
AB6
B
239 243Right-handed 310
Helix 16
AB7
B
304 309Right-handed alpha
Helix 17
AB8
B
316 330Right-handed alpha
Helix 18
AB9
B
334 349Right-handed alpha
Helix 19
AC1
C
106 117Right-handed alpha
Helix 20
AC2
C
118 121Right-handed 310
Helix 21
AC3
C
150 165Right-handed alpha
Helix 22
AC4
C
176 189Right-handed alpha
Helix 23
AC5
C
190 196Right-handed 310
Helix 24
AC6
C
227 235Right-handed alpha
Helix 25
AC7
C
239 243Right-handed 310
Helix 26
AC8
C
304 308Right-handed 310
Helix 27
AC9
C
316 330Right-handed alpha
Helix 28
AD1
C
334 349Right-handed alpha
Helix 29
AD2
D
106 117Right-handed alpha
Helix 30
AD3
D
150 165Right-handed alpha
Helix 31
AD4
D
176 189Right-handed alpha
Helix 32
AD5
D
190 196Right-handed 310
Helix 33
AD6
D
227 234Right-handed alpha
Helix 34
AD7
D
239 243Right-handed 310
Helix 35
AD8
D
304 308Right-handed 310
Helix 36
AD9
D
316 330Right-handed alpha
Helix 37
AE1
D
334 348Right-handed alpha
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There are 8 sheets in PDB entry 6KMT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
167 173first strand
Strand 2
A
132 138parallel
Strand 3
A
199 206parallel
Strand 4
A
247 254parallel
Strand 5
A
296 301parallel
Strand 6
A
357 359anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
211 213first strand
Strand 2
A
224 226anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
167 173first strand
Strand 2
B
132 138parallel
Strand 3
B
199 206parallel
Strand 4
B
247 254parallel
Strand 5
B
296 301parallel
Strand 6
B
357 359anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
211 213first strand
Strand 2
B
224 226anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
167 173first strand
Strand 2
C
132 138parallel
Strand 3
C
199 206parallel
Strand 4
C
247 254parallel
Strand 5
C
296 301parallel
Strand 6
C
357 359anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
211 213first strand
Strand 2
C
224 226anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
167 173first strand
Strand 2
D
132 138parallel
Strand 3
D
199 206parallel
Strand 4
D
247 254parallel
Strand 5
D
296 301parallel
Strand 6
D
357 359anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
211 213first strand
Strand 2
D
224 226anti-parallel
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