Analysis of interatomic Contacts of Structural Units in PDB entry:
6KMZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6KMZ entry

There are 10 chains in PDB entry 6KMZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 105	ASP 285
B	ALA 105	ASP 285
E	PHE 287	SER 480
C	ALA 105	ASP 285
D	ALA 105	ASP 285
H	ASP 286	SER 480
a	ALA 290	ASN 377
b	ALA 290	ASN 377
c	ALA 290	ASN 377
d	ALA 290	ASN 377

There are 45 helices in PDB entry 6KMZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	110	121	Right-handed alpha
Helix 2	AA2	A	154	169	Right-handed alpha
Helix 3	AA3	A	180	193	Right-handed alpha
Helix 4	AA4	A	194	200	Right-handed 310
Helix 5	AA5	A	231	239	Right-handed alpha
Helix 6	AA6	B	110	121	Right-handed alpha
Helix 7	AA7	B	154	169	Right-handed alpha
Helix 8	AA8	B	180	193	Right-handed alpha
Helix 9	AA9	B	194	200	Right-handed 310
Helix 10	AB1	B	231	239	Right-handed alpha
Helix 11	AB2	E	288	302	Right-handed alpha
Helix 12	AB3	E	305	322	Right-handed alpha
Helix 13	AB4	E	347	356	Right-handed alpha
Helix 14	AB5	E	364	379	Right-handed alpha
Helix 15	AB6	E	382	396	Right-handed alpha
Helix 16	AB7	E	398	412	Right-handed alpha
Helix 17	AB8	E	436	446	Right-handed alpha
Helix 18	AB9	E	459	461	Right-handed 310
Helix 19	AC1	E	462	480	Right-handed alpha
Helix 20	AC2	C	110	121	Right-handed alpha
Helix 21	AC3	C	154	169	Right-handed alpha
Helix 22	AC4	C	180	193	Right-handed alpha
Helix 23	AC5	C	194	200	Right-handed 310
Helix 24	AC6	C	231	239	Right-handed alpha
Helix 25	AC7	D	110	121	Right-handed alpha
Helix 26	AC8	D	154	169	Right-handed alpha
Helix 27	AC9	D	180	193	Right-handed alpha
Helix 28	AD1	D	194	200	Right-handed 310
Helix 29	AD2	D	231	239	Right-handed alpha
Helix 30	AD3	H	287	302	Right-handed alpha
Helix 31	AD4	H	305	321	Right-handed alpha
Helix 32	AD5	H	322	332	Right-handed alpha
Helix 33	AD6	H	346	354	Right-handed alpha
Helix 34	AD7	H	364	379	Right-handed alpha
Helix 35	AD8	H	382	395	Right-handed alpha
Helix 36	AD9	H	401	410	Right-handed alpha
Helix 37	AE1	H	466	478	Right-handed alpha
Helix 38	AE2	a	321	334	Right-handed alpha
Helix 39	AE3	a	338	350	Right-handed alpha
Helix 40	AE4	b	321	334	Right-handed alpha
Helix 41	AE5	b	338	350	Right-handed alpha
Helix 42	AE6	c	321	334	Right-handed alpha
Helix 43	AE7	c	338	350	Right-handed alpha
Helix 44	AE8	d	320	334	Right-handed alpha
Helix 45	AE9	d	338	350	Right-handed alpha

There are 16 sheets in PDB entry 6KMZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	172	177	first strand
Strand 2	A	137	142	parallel
Strand 3	A	203	208	parallel
Strand 4	A	251	256	parallel
Strand 5	a	300	304	parallel
Strand 6	a	361	363	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	215	217	first strand
Strand 2	A	228	230	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	265	269	first strand
Strand 2	b	291	295	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	282	284	first strand
Strand 2	a	313	315	anti-parallel
Strand 3	a	319	320	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	172	177	first strand
Strand 2	B	137	142	parallel
Strand 3	B	203	208	parallel
Strand 4	B	251	256	parallel
Strand 5	b	300	304	parallel
Strand 6	b	361	363	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	211	212	first strand
Strand 2	B	215	217	anti-parallel
Strand 3	B	228	230	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	265	269	first strand
Strand 2	a	291	295	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	282	284	first strand
Strand 2	b	313	315	anti-parallel
Strand 3	b	319	320	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	172	177	first strand
Strand 2	C	137	142	parallel
Strand 3	C	203	208	parallel
Strand 4	C	251	256	parallel
Strand 5	c	300	304	parallel
Strand 6	c	361	363	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	215	217	first strand
Strand 2	C	228	230	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	265	268	first strand
Strand 2	d	292	295	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	282	284	first strand
Strand 2	c	313	315	anti-parallel
Strand 3	c	319	320	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	172	177	first strand
Strand 2	D	137	142	parallel
Strand 3	D	203	208	parallel
Strand 4	D	251	256	parallel
Strand 5	d	300	304	parallel
Strand 6	d	361	363	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	215	217	first strand
Strand 2	D	228	230	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	265	269	first strand
Strand 2	c	291	295	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	282	284	first strand
Strand 2	d	313	315	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6KMZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6KMZ