Analysis of interatomic Contacts of Structural Units in PDB entry:
6KN0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6KN0 entry

There are 6 chains in PDB entry 6KN0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 131	ASP 297
B	ALA 317	HIS 404
C	GLY 131	ASP 297
D	ALA 317	HIS 404
E	PHE 283	SER 480
F	PHE 283	SER 480

There are 39 helices in PDB entry 6KN0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	137	148	Right-handed alpha
Helix 2	AA2	A	149	152	Right-handed 310
Helix 3	AA3	A	181	196	Right-handed alpha
Helix 4	AA4	A	207	220	Right-handed alpha
Helix 5	AA5	A	221	225	Right-handed 310
Helix 6	AA6	A	258	263	Right-handed alpha
Helix 7	AA7	A	270	274	Right-handed 310
Helix 8	AA8	B	348	361	Right-handed alpha
Helix 9	AA9	B	365	377	Right-handed alpha
Helix 10	AB1	C	137	146	Right-handed alpha
Helix 11	AB2	C	181	196	Right-handed alpha
Helix 12	AB3	C	207	220	Right-handed alpha
Helix 13	AB4	C	258	265	Right-handed alpha
Helix 14	AB5	C	270	274	Right-handed 310
Helix 15	AB6	D	348	360	Right-handed alpha
Helix 16	AB7	D	365	376	Right-handed alpha
Helix 17	AB8	E	286	300	Right-handed alpha
Helix 18	AB9	E	301	304	Right-handed 310
Helix 19	AC1	E	305	320	Right-handed alpha
Helix 20	AC2	E	322	334	Right-handed alpha
Helix 21	AC3	E	347	354	Right-handed alpha
Helix 22	AC4	E	364	379	Right-handed alpha
Helix 23	AC5	E	382	395	Right-handed alpha
Helix 24	AC6	E	398	412	Right-handed alpha
Helix 25	AC7	E	436	444	Right-handed alpha
Helix 26	AC8	E	459	461	Right-handed 310
Helix 27	AC9	E	462	480	Right-handed alpha
Helix 28	AD1	F	286	301	Right-handed alpha
Helix 29	AD2	F	302	304	Right-handed 310
Helix 30	AD3	F	305	320	Right-handed alpha
Helix 31	AD4	F	322	333	Right-handed alpha
Helix 32	AD5	F	347	354	Right-handed alpha
Helix 33	AD6	F	355	357	Right-handed 310
Helix 34	AD7	F	364	379	Right-handed alpha
Helix 35	AD8	F	382	396	Right-handed alpha
Helix 36	AD9	F	398	412	Right-handed alpha
Helix 37	AE1	F	436	444	Right-handed alpha
Helix 38	AE2	F	459	461	Right-handed 310
Helix 39	AE3	F	462	480	Right-handed alpha

There are 12 sheets in PDB entry 6KN0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	199	204	first strand
Strand 2	A	164	169	parallel
Strand 3	A	230	235	parallel
Strand 4	A	278	283	parallel
Strand 5	B	327	331	parallel
Strand 6	B	388	390	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	242	244	first strand
Strand 2	A	255	257	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	287	289	first strand
Strand 2	B	336	337	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	292	296	first strand
Strand 2	D	318	322	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	318	322	first strand
Strand 2	C	292	296	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	341	342	first strand
Strand 2	B	346	347	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	198	204	first strand
Strand 2	C	163	169	parallel
Strand 3	C	230	235	parallel
Strand 4	C	278	283	parallel
Strand 5	D	327	331	parallel
Strand 6	D	388	390	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	242	244	first strand
Strand 2	C	255	257	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	287	289	first strand
Strand 2	D	336	337	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	341	342	first strand
Strand 2	D	346	347	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	419	421	first strand
Strand 2	E	456	458	anti-parallel
Strand 3	E	448	449	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	419	420	first strand
Strand 2	F	456	458	anti-parallel
Strand 3	F	448	449	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6KN0

Analysis of interatomic Contacts of Structural Units in PDB entry:
6KN0