Analysis of interatomic Contacts of Structural Units in PDB entry:
6KN9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6KN9 entry

There are 6 chains in PDB entry 6KN9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 28	LYS 355
B	LYS 29	ARG 356
C	LYS 29	ARG 356
D	GLY -4	VAL 247
E	ASP -1	THR 245
F	GLU 1	ARG 251

There are 11 helices in PDB entry 6KN9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	212	216	Right-handed 310
Helix 2	AA2	A	328	332	Right-handed 310
Helix 3	AA3	B	176	179	Right-handed 310
Helix 4	AA4	B	212	216	Right-handed 310
Helix 5	AA5	B	328	332	Right-handed 310
Helix 6	AA6	C	212	216	Right-handed 310
Helix 7	AA7	C	328	332	Right-handed 310
Helix 8	AA8	D	28	30	Right-handed 310
Helix 9	AA9	D	219	223	Right-handed 310
Helix 10	AB1	F	28	30	Right-handed 310
Helix 11	AB2	F	219	223	Right-handed 310

There are 32 sheets in PDB entry 6KN9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	34	first strand
Strand 2	A	141	147	parallel
Strand 3	A	125	126	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	45	first strand
Strand 2	A	110	113	anti-parallel
Strand 3	A	105	106	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	162	166	first strand
Strand 2	A	230	243	parallel
Strand 3	A	217	227	anti-parallel
Strand 4	A	190	193	anti-parallel
Strand 5	A	196	199	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	171	174	first strand
Strand 2	A	205	208	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	252	255	first strand
Strand 2	A	269	277	anti-parallel
Strand 3	A	315	323	anti-parallel
Strand 4	A	306	310	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	260	263	first strand
Strand 2	A	344	354	parallel
Strand 3	A	334	341	anti-parallel
Strand 4	A	286	293	anti-parallel
Strand 5	A	296	299	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	35	first strand
Strand 2	B	141	148	parallel
Strand 3	B	124	126	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	42	44	first strand
Strand 2	B	111	113	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	164	166	first strand
Strand 2	B	238	243	parallel
Strand 3	B	217	220	anti-parallel
Strand 4	B	192	193	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	171	174	first strand
Strand 2	B	205	208	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	252	255	first strand
Strand 2	B	269	277	anti-parallel
Strand 3	B	315	323	anti-parallel
Strand 4	B	306	310	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	260	263	first strand
Strand 2	B	345	354	parallel
Strand 3	B	334	340	anti-parallel
Strand 4	B	286	292	anti-parallel
Strand 5	B	298	299	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	143	147	first strand
Strand 2	C	30	34	parallel
Strand 3	C	231	243	parallel
Strand 4	C	162	166	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	143	147	first strand
Strand 2	C	30	34	parallel
Strand 3	C	231	243	parallel
Strand 4	C	217	226	anti-parallel
Strand 5	C	190	193	anti-parallel
Strand 6	C	196	199	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	45	first strand
Strand 2	C	110	113	anti-parallel
Strand 3	C	105	106	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	171	174	first strand
Strand 2	C	205	208	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	252	255	first strand
Strand 2	C	269	277	anti-parallel
Strand 3	C	315	323	anti-parallel
Strand 4	C	306	310	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	260	263	first strand
Strand 2	C	345	354	parallel
Strand 3	C	334	340	anti-parallel
Strand 4	C	286	293	anti-parallel
Strand 5	C	296	299	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	7	first strand
Strand 2	D	17	25	anti-parallel
Strand 3	D	78	84	anti-parallel
Strand 4	D	69	73	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	57	60	first strand
Strand 2	D	45	52	anti-parallel
Strand 3	D	32	39	anti-parallel
Strand 4	D	92	100	anti-parallel
Strand 5	D	110	113	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	57	60	first strand
Strand 2	D	45	52	anti-parallel
Strand 3	D	32	39	anti-parallel
Strand 4	D	92	100	anti-parallel
Strand 5	D	117	119	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	149	150	first strand
Strand 2	D	245	247	parallel
Strand 3	D	224	231	anti-parallel
Strand 4	D	174	178	anti-parallel
Strand 5	D	185	189	anti-parallel
Strand 6	D	193	194	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	149	150	first strand
Strand 2	D	245	247	parallel
Strand 3	D	224	231	anti-parallel
Strand 4	D	239	241	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	159	164	first strand
Strand 2	D	210	215	anti-parallel
Strand 3	D	202	205	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	5	first strand
Strand 2	E	22	24	anti-parallel
Strand 3	E	78	81	anti-parallel
Strand 4	E	70	73	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	32	39	first strand
Strand 2	E	93	100	anti-parallel
Strand 3	E	110	113	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	193	194	first strand
Strand 2	E	185	189	anti-parallel
Strand 3	E	174	178	anti-parallel
Strand 4	E	225	229	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	7	first strand
Strand 2	F	18	25	anti-parallel
Strand 3	F	78	83	anti-parallel
Strand 4	F	69	73	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	11	first strand
Strand 2	F	117	120	parallel
Strand 3	F	92	100	anti-parallel
Strand 4	F	32	39	anti-parallel
Strand 5	F	45	52	anti-parallel
Strand 6	F	57	60	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	149	150	first strand
Strand 2	F	245	246	parallel
Strand 3	F	225	231	anti-parallel
Strand 4	F	174	178	anti-parallel
Strand 5	F	185	189	anti-parallel
Strand 6	F	193	194	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	149	150	first strand
Strand 2	F	245	246	parallel
Strand 3	F	225	231	anti-parallel
Strand 4	F	239	241	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	159	162	first strand
Strand 2	F	212	215	anti-parallel
Strand 3	F	202	205	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6KN9

Analysis of interatomic Contacts of Structural Units in PDB entry:
6KN9