Analysis of interatomic Contacts of Structural Units in PDB entry:
6KNB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6KNB entry

There are 7 chains in PDB entry 6KNB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 286	VAL 735
B	PRO 8	SER 1228
C	MET 1	GLU 249
D	MET 1	GLU 249
E	MET 1	GLU 249
F	C 1	A 25
G	T 11	G 35

There are 74 helices in PDB entry 6KNB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	314	319	Right-handed alpha
Helix 2	AA2	A	337	360	Right-handed alpha
Helix 3	AA3	A	369	374	Right-handed 310
Helix 4	AA4	A	417	424	Right-handed alpha
Helix 5	AA5	A	482	494	Right-handed alpha
Helix 6	AA6	A	499	507	Right-handed alpha
Helix 7	AA7	A	527	532	Right-handed alpha
Helix 8	AA8	A	537	550	Right-handed alpha
Helix 9	AA9	A	581	587	Right-handed alpha
Helix 10	AB1	A	612	621	Right-handed alpha
Helix 11	AB2	A	628	638	Right-handed alpha
Helix 12	AB3	A	697	704	Right-handed alpha
Helix 13	AB4	A	729	732	Right-handed 310
Helix 14	AB5	B	9	33	Right-handed alpha
Helix 15	AB6	B	49	58	Right-handed alpha
Helix 16	AB7	B	63	75	Right-handed alpha
Helix 17	AB8	B	75	90	Right-handed alpha
Helix 18	AB9	B	97	114	Right-handed alpha
Helix 19	AC1	B	154	173	Right-handed alpha
Helix 20	AC2	B	180	197	Right-handed alpha
Helix 21	AC3	B	206	217	Right-handed alpha
Helix 22	AC4	B	245	257	Right-handed alpha
Helix 23	AC5	B	259	271	Right-handed alpha
Helix 24	AC6	B	276	286	Right-handed alpha
Helix 25	AC7	B	318	330	Right-handed alpha
Helix 26	AC8	B	330	340	Right-handed alpha
Helix 27	AC9	B	341	343	Right-handed 310
Helix 28	AD1	B	375	382	Right-handed alpha
Helix 29	AD2	B	426	434	Right-handed alpha
Helix 30	AD3	B	466	483	Right-handed alpha
Helix 31	AD4	B	493	505	Right-handed alpha
Helix 32	AD5	B	507	517	Right-handed alpha
Helix 33	AD6	B	524	536	Right-handed alpha
Helix 34	AD7	B	551	564	Right-handed alpha
Helix 35	AD8	B	589	596	Right-handed alpha
Helix 36	AD9	B	619	624	Right-handed alpha
Helix 37	AE1	B	625	630	Right-handed 310
Helix 38	AE2	B	640	648	Right-handed alpha
Helix 39	AE3	B	686	691	Right-handed 310
Helix 40	AE4	B	695	703	Right-handed alpha
Helix 41	AE5	B	748	755	Right-handed alpha
Helix 42	AE6	B	775	788	Right-handed alpha
Helix 43	AE7	B	810	821	Right-handed alpha
Helix 44	AE8	B	843	848	Right-handed alpha
Helix 45	AE9	B	850	858	Right-handed alpha
Helix 46	AF1	B	885	906	Right-handed alpha
Helix 47	AF2	B	918	922	Right-handed 310
Helix 48	AF3	B	958	962	Right-handed 310
Helix 49	AF4	B	974	981	Right-handed alpha
Helix 50	AF5	B	982	986	Right-handed 310
Helix 51	AF6	B	1011	1017	Right-handed alpha
Helix 52	AF7	B	1023	1029	Right-handed alpha
Helix 53	AF8	B	1038	1047	Right-handed alpha
Helix 54	AF9	B	1081	1100	Right-handed alpha
Helix 55	AG1	B	1107	1127	Right-handed alpha
Helix 56	AG2	B	1160	1177	Right-handed alpha
Helix 57	AG3	B	1182	1198	Right-handed alpha
Helix 58	AG4	B	1215	1228	Right-handed alpha
Helix 59	AG5	C	9	20	Right-handed alpha
Helix 60	AG6	C	56	58	Right-handed 310
Helix 61	AG7	C	73	80	Right-handed alpha
Helix 62	AG8	C	81	83	Right-handed 310
Helix 63	AG9	C	138	148	Right-handed alpha
Helix 64	AH1	C	201	208	Right-handed alpha
Helix 65	AH2	C	209	211	Right-handed 310
Helix 66	AH3	D	9	24	Right-handed alpha
Helix 67	AH4	D	73	82	Right-handed alpha
Helix 68	AH5	D	137	152	Right-handed alpha
Helix 69	AH6	D	204	209	Right-handed alpha
Helix 70	AH7	E	10	24	Right-handed alpha
Helix 71	AH8	E	72	78	Right-handed alpha
Helix 72	AH9	E	79	83	Right-handed 310
Helix 73	AI1	E	138	148	Right-handed alpha
Helix 74	AI2	E	201	211	Right-handed alpha

There are 20 sheets in PDB entry 6KNB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	380	384	first strand
Strand 2	A	431	435	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	387	391	first strand
Strand 2	A	396	401	anti-parallel
Strand 3	A	406	411	anti-parallel
Strand 4	A	442	446	parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	591	592	first strand
Strand 2	A	556	559	parallel
Strand 3	A	511	513	parallel
Strand 4	A	467	469	parallel
Strand 5	A	711	716	anti-parallel
Strand 6	A	724	727	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	597	601	first strand
Strand 2	A	604	608	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	679	682	first strand
Strand 2	A	685	688	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	125	132	first strand
Strand 2	B	140	146	anti-parallel
Strand 3	B	220	222	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	421	423	first strand
Strand 2	B	413	416	anti-parallel
Strand 3	B	437	440	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	566	569	first strand
Strand 2	B	578	584	anti-parallel
Strand 3	B	611	615	anti-parallel
Strand 4	B	601	603	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	706	710	first strand
Strand 2	B	770	774	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	721	722	first strand
Strand 2	B	713	714	anti-parallel
Strand 3	B	735	736	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	738	739	first strand
Strand 2	B	746	747	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	832	834	first strand
Strand 2	B	969	973	anti-parallel
Strand 3	B	925	929	anti-parallel
Strand 4	B	935	940	anti-parallel
Strand 5	B	999	1001	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	841	842	first strand
Strand 2	B	875	876	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1130	1131	first strand
Strand 2	B	1154	1155	anti-parallel

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There are 9 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	60	62	first strand
Strand 2	C	3	8	anti-parallel
Strand 3	C	88	93	anti-parallel
Strand 4	C	98	104	anti-parallel
Strand 5	C	109	114	anti-parallel
Strand 6	E	174	179	anti-parallel
Strand 7	E	163	168	anti-parallel
Strand 8	E	154	160	anti-parallel
Strand 9	E	195	200	anti-parallel

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There are 9 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	67	72	first strand
Strand 2	C	26	32	anti-parallel
Strand 3	C	35	41	anti-parallel
Strand 4	C	48	54	anti-parallel
Strand 5	C	237	243	anti-parallel
Strand 6	C	227	233	anti-parallel
Strand 7	C	216	221	anti-parallel
Strand 8	C	132	137	anti-parallel
Strand 9	C	189	191	anti-parallel

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There are 9 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	195	199	first strand
Strand 2	C	154	160	anti-parallel
Strand 3	C	163	169	anti-parallel
Strand 4	C	174	180	anti-parallel
Strand 5	D	108	114	anti-parallel
Strand 6	D	98	104	anti-parallel
Strand 7	D	88	93	anti-parallel
Strand 8	D	3	8	anti-parallel
Strand 9	D	60	62	anti-parallel

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There are 9 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	67	72	first strand
Strand 2	D	26	32	anti-parallel
Strand 3	D	35	41	anti-parallel
Strand 4	D	47	54	anti-parallel
Strand 5	D	237	243	anti-parallel
Strand 6	D	227	233	anti-parallel
Strand 7	D	216	220	anti-parallel
Strand 8	D	132	136	anti-parallel
Strand 9	D	189	191	anti-parallel

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There are 9 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	195	200	first strand
Strand 2	D	154	160	anti-parallel
Strand 3	D	163	169	anti-parallel
Strand 4	D	174	179	anti-parallel
Strand 5	E	108	114	anti-parallel
Strand 6	E	98	103	anti-parallel
Strand 7	E	88	93	anti-parallel
Strand 8	E	3	8	anti-parallel
Strand 9	E	60	63	anti-parallel

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There are 9 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	67	70	first strand
Strand 2	E	28	32	anti-parallel
Strand 3	E	35	40	anti-parallel
Strand 4	E	47	54	anti-parallel
Strand 5	E	237	243	anti-parallel
Strand 6	E	227	233	anti-parallel
Strand 7	E	216	220	anti-parallel
Strand 8	E	132	137	anti-parallel
Strand 9	E	186	191	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6KNB

Analysis of interatomic Contacts of Structural Units in PDB entry:
6KNB