Analysis of interatomic Contacts of Structural Units in PDB entry:
6KNF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6KNF entry

There are 3 chains in PDB entry 6KNF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 7MET 340
B
 VAL 7MET 340
C
 VAL 7MET 340
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 6KNF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 12Right-handed 310
Helix 2
AA2
A
105 109Right-handed 310
Helix 3
AA3
A
141 149Right-handed alpha
Helix 4
AA4
A
198 212Right-handed alpha
Helix 5
AA5
A
228 232Right-handed 310
Helix 6
AA6
A
307 315Right-handed alpha
Helix 7
AA7
B
8 12Right-handed 310
Helix 8
AA8
B
105 109Right-handed 310
Helix 9
AA9
B
141 149Right-handed alpha
Helix 10
AB1
B
198 212Right-handed alpha
Helix 11
AB2
B
228 232Right-handed 310
Helix 12
AB3
B
307 315Right-handed alpha
Helix 13
AB4
C
8 12Right-handed 310
Helix 14
AB5
C
105 109Right-handed 310
Helix 15
AB6
C
141 149Right-handed alpha
Helix 16
AB7
C
198 212Right-handed alpha
Helix 17
AB8
C
228 232Right-handed 310
Helix 18
AB9
C
307 315Right-handed alpha
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There are 15 sheets in PDB entry 6KNF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 16first strand
Strand 2
A
38 51parallel
Strand 3
A
58 64anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 16first strand
Strand 2
A
38 51parallel
Strand 3
A
79 87parallel
Strand 4
A
118 126anti-parallel
Strand 5
C
331 338anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
73 76first strand
Strand 2
A
151 157parallel
Strand 3
A
130 135anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
217 220first strand
Strand 2
A
174 183anti-parallel
Strand 3
A
240 247parallel
Strand 4
A
287 294anti-parallel
Strand 5
A
261 265anti-parallel
Strand 6
A
275 278anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
233 236first strand
Strand 2
A
317 323parallel
Strand 3
A
299 305anti-parallel
Strand 4
A
254 257anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
331 338first strand
Strand 2
B
118 126anti-parallel
Strand 3
B
79 87anti-parallel
Strand 4
B
38 51parallel
Strand 5
B
14 16parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
331 338first strand
Strand 2
B
118 126anti-parallel
Strand 3
B
79 87anti-parallel
Strand 4
B
38 51parallel
Strand 5
B
58 64anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
73 76first strand
Strand 2
B
151 157parallel
Strand 3
B
130 135anti-parallel
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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
217 220first strand
Strand 2
B
174 183anti-parallel
Strand 3
B
240 247parallel
Strand 4
B
287 294anti-parallel
Strand 5
B
261 265anti-parallel
Strand 6
B
275 278anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
233 236first strand
Strand 2
B
317 323parallel
Strand 3
B
299 305anti-parallel
Strand 4
B
254 257anti-parallel
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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
331 338first strand
Strand 2
C
118 126anti-parallel
Strand 3
C
79 87anti-parallel
Strand 4
C
38 51parallel
Strand 5
C
14 16parallel
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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
331 338first strand
Strand 2
C
118 126anti-parallel
Strand 3
C
79 87anti-parallel
Strand 4
C
38 51parallel
Strand 5
C
58 64anti-parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
73 76first strand
Strand 2
C
151 157parallel
Strand 3
C
130 135anti-parallel
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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
217 220first strand
Strand 2
C
174 183anti-parallel
Strand 3
C
240 247parallel
Strand 4
C
287 294anti-parallel
Strand 5
C
261 265anti-parallel
Strand 6
C
275 278anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
233 236first strand
Strand 2
C
317 323parallel
Strand 3
C
299 305anti-parallel
Strand 4
C
254 257anti-parallel
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