Analysis of interatomic Contacts of Structural Units in PDB entry:
6KNI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6KNI entry

There are 3 chains in PDB entry 6KNI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 2GLN 395
B
 MET 1THR 394
C
 ARG 2THR 394
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 6KNI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 14Right-handed alpha
Helix 2
AA2
A
25 39Right-handed alpha
Helix 3
AA3
A
50 52Right-handed 310
Helix 4
AA4
A
54 63Right-handed alpha
Helix 5
AA5
A
72 81Right-handed alpha
Helix 6
AA6
A
84 86Right-handed 310
Helix 7
AA7
A
96 107Right-handed alpha
Helix 8
AA8
A
115 130Right-handed alpha
Helix 9
AA9
A
165 175Right-handed alpha
Helix 10
AB1
A
194 217Right-handed alpha
Helix 11
AB2
A
241 256Right-handed alpha
Helix 12
AB3
A
268 273Right-handed alpha
Helix 13
AB4
A
304 310Right-handed alpha
Helix 14
AB5
A
374 378Right-handed 310
Helix 15
AB6
A
381 385Right-handed 310
Helix 16
AB7
B
4 14Right-handed alpha
Helix 17
AB8
B
25 39Right-handed alpha
Helix 18
AB9
B
50 52Right-handed 310
Helix 19
AC1
B
54 63Right-handed alpha
Helix 20
AC2
B
72 81Right-handed alpha
Helix 21
AC3
B
84 86Right-handed 310
Helix 22
AC4
B
96 107Right-handed alpha
Helix 23
AC5
B
115 130Right-handed alpha
Helix 24
AC6
B
165 176Right-handed alpha
Helix 25
AC7
B
194 217Right-handed alpha
Helix 26
AC8
B
241 256Right-handed alpha
Helix 27
AC9
B
268 273Right-handed alpha
Helix 28
AD1
B
304 310Right-handed alpha
Helix 29
AD2
B
374 378Right-handed 310
Helix 30
AD3
B
381 385Right-handed 310
Helix 31
AD4
C
4 14Right-handed alpha
Helix 32
AD5
C
25 39Right-handed alpha
Helix 33
AD6
C
50 52Right-handed 310
Helix 34
AD7
C
54 63Right-handed alpha
Helix 35
AD8
C
72 81Right-handed alpha
Helix 36
AD9
C
84 86Right-handed 310
Helix 37
AE1
C
96 107Right-handed alpha
Helix 38
AE2
C
115 130Right-handed alpha
Helix 39
AE3
C
165 175Right-handed alpha
Helix 40
AE4
C
194 217Right-handed alpha
Helix 41
AE5
C
241 256Right-handed alpha
Helix 42
AE6
C
268 273Right-handed alpha
Helix 43
AE7
C
304 310Right-handed alpha
Helix 44
AE8
C
374 378Right-handed 310
Helix 45
AE9
C
381 385Right-handed 310
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There are 10 sheets in PDB entry 6KNI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
315 318first strand
Strand 2
A
364 367anti-parallel
Strand 3
A
276 288anti-parallel
Strand 4
A
291 296anti-parallel
Strand 5
A
331 340parallel
Strand 6
A
349 360anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
315 318first strand
Strand 2
A
364 367anti-parallel
Strand 3
A
276 288anti-parallel
Strand 4
A
19 24anti-parallel
Strand 5
A
389 393parallel
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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 162first strand
Strand 2
A
133 140parallel
Strand 3
A
179 185parallel
Strand 4
A
222 224parallel
Strand 5
A
262 267parallel
Strand 6
A
43 48parallel
Strand 7
A
67 70parallel
Strand 8
A
88 90parallel
Strand 9
A
110 113parallel
Strand 10
A
133 140parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
315 318first strand
Strand 2
B
364 367anti-parallel
Strand 3
B
276 288anti-parallel
Strand 4
B
291 296anti-parallel
Strand 5
B
335 340parallel
Strand 6
B
349 356anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
315 318first strand
Strand 2
B
364 367anti-parallel
Strand 3
B
276 288anti-parallel
Strand 4
B
19 24anti-parallel
Strand 5
B
389 393parallel
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There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
161 162first strand
Strand 2
B
133 140parallel
Strand 3
B
179 185parallel
Strand 4
B
222 224parallel
Strand 5
B
262 267parallel
Strand 6
B
43 48parallel
Strand 7
B
67 70parallel
Strand 8
B
88 90parallel
Strand 9
B
110 113parallel
Strand 10
B
133 140parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
331 332first strand
Strand 2
B
359 360anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
315 318first strand
Strand 2
C
364 367anti-parallel
Strand 3
C
276 288anti-parallel
Strand 4
C
291 296anti-parallel
Strand 5
C
331 340parallel
Strand 6
C
349 360anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
315 318first strand
Strand 2
C
364 367anti-parallel
Strand 3
C
276 288anti-parallel
Strand 4
C
19 24anti-parallel
Strand 5
C
389 393parallel
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There are 10 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
161 162first strand
Strand 2
C
133 140parallel
Strand 3
C
179 186parallel
Strand 4
C
222 224parallel
Strand 5
C
262 267parallel
Strand 6
C
43 48parallel
Strand 7
C
67 70parallel
Strand 8
C
88 90parallel
Strand 9
C
110 113parallel
Strand 10
C
133 140parallel
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