Analysis of interatomic Contacts of Structural Units in PDB entry:
6KNJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6KNJ entry

There are 2 chains in PDB entry 6KNJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 0LYS 289
B
 MET 0LYS 289
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 6KNJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 16Right-handed 310
Helix 2
AA2
A
23 26Right-handed 310
Helix 3
AA3
A
34 44Right-handed alpha
Helix 4
AA4
A
58 63Right-handed alpha
Helix 5
AA5
A
64 66Right-handed 310
Helix 6
AA6
A
68 79Right-handed alpha
Helix 7
AA7
A
80 89Right-handed alpha
Helix 8
AA8
A
106 113Right-handed alpha
Helix 9
AA9
A
115 120Right-handed alpha
Helix 10
AB1
A
140 152Right-handed alpha
Helix 11
AB2
A
213 220Right-handed alpha
Helix 12
AB3
A
231 243Right-handed alpha
Helix 13
AB4
A
259 273Right-handed alpha
Helix 14
AB5
A
277 287Right-handed alpha
Helix 15
AB6
B
34 45Right-handed alpha
Helix 16
AB7
B
58 65Right-handed alpha
Helix 17
AB8
B
68 78Right-handed alpha
Helix 18
AB9
B
80 86Right-handed alpha
Helix 19
AC1
B
107 113Right-handed alpha
Helix 20
AC2
B
115 120Right-handed alpha
Helix 21
AC3
B
140 153Right-handed alpha
Helix 22
AC4
B
166 169Right-handed 310
Helix 23
AC5
B
214 220Right-handed alpha
Helix 24
AC6
B
231 243Right-handed alpha
Helix 25
AC7
B
259 272Right-handed alpha
Helix 26
AC8
B
276 287Right-handed alpha
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There are 6 sheets in PDB entry 6KNJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 101first strand
Strand 2
A
49 54parallel
Strand 3
A
3 8parallel
Strand 4
A
125 127parallel
Strand 5
A
203 210anti-parallel
Strand 6
A
156 161anti-parallel
Strand 7
A
248 249parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 29first strand
Strand 2
A
32 33anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 134first strand
Strand 2
A
253 256anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 173first strand
Strand 2
A
190 191anti-parallel
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There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 101first strand
Strand 2
B
49 54parallel
Strand 3
B
3 8parallel
Strand 4
B
124 127parallel
Strand 5
B
203 211anti-parallel
Strand 6
B
171 175anti-parallel
Strand 7
B
184 192anti-parallel
Strand 8
B
245 249anti-parallel
Strand 9
B
155 161parallel
Strand 10
B
203 211anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
131 134first strand
Strand 2
B
253 256anti-parallel
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