Analysis of interatomic Contacts of Structural Units in PDB entry:
6KNM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6KNM entry

There are 2 chains in PDB entry 6KNM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 GLU 18GLY 327
A
 GLN 1SER 129
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 6KNM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
29 56Right-handed alpha
Helix 2
AA2
B
62 64Right-handed 310
Helix 3
AA3
B
65 80Right-handed alpha
Helix 4
AA4
B
81 91Right-handed alpha
Helix 5
AA5
B
97 133Right-handed alpha
Helix 6
AA6
B
141 160Right-handed alpha
Helix 7
AA7
B
161 167Right-handed alpha
Helix 8
AA8
B
193 210Right-handed alpha
Helix 9
AA9
B
210 229Right-handed alpha
Helix 10
AB1
B
1019 1023Right-handed 310
Helix 11
AB2
B
1029 1033Right-handed 310
Helix 12
AB3
B
1045 1047Right-handed 310
Helix 13
AB4
B
245 275Right-handed alpha
Helix 14
AB5
B
280 301Right-handed alpha
Helix 15
AB6
B
304 313Right-handed alpha
Helix 16
AB7
B
313 327Right-handed alpha
Helix 17
AB8
A
86 90Right-handed 310
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There are 6 sheets in PDB entry 6KNM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
168 171first strand
Strand 2
B
180 183anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1012 1013first strand
Strand 2
B
1004 1006anti-parallel
Strand 3
B
1049 1051anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 7first strand
Strand 2
A
21 25anti-parallel
Strand 3
A
77 83anti-parallel
Strand 4
A
17 19anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
3 7first strand
Strand 2
A
21 25anti-parallel
Strand 3
A
77 83anti-parallel
Strand 4
A
67 71anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 13first strand
Strand 2
A
123 128parallel
Strand 3
A
91 93anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 59first strand
Strand 2
A
49 51anti-parallel
Strand 3
A
32 36anti-parallel
Strand 4
A
95 99anti-parallel
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