Analysis of interatomic Contacts of Structural Units in PDB entry:
6KNR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6KNR entry

There are 2 chains in PDB entry 6KNR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 235ALA 456
B
 PRO 233LYS 457
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 6KNR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
235 245Right-handed alpha
Helix 2
AA2
A
260 284Right-handed alpha
Helix 3
AA3
A
288 292Right-handed 310
Helix 4
AA4
A
293 317Right-handed alpha
Helix 5
AA5
A
333 340Right-handed alpha
Helix 6
AA6
A
342 359Right-handed alpha
Helix 7
AA7
A
362 376Right-handed alpha
Helix 8
AA8
A
384 407Right-handed alpha
Helix 9
AA9
A
412 419Right-handed alpha
Helix 10
AB1
A
420 442Right-handed alpha
Helix 11
AB2
A
447 456Right-handed alpha
Helix 12
AB3
B
235 245Right-handed alpha
Helix 13
AB4
B
260 284Right-handed alpha
Helix 14
AB5
B
293 317Right-handed alpha
Helix 15
AB6
B
334 340Right-handed alpha
Helix 16
AB7
B
342 360Right-handed alpha
Helix 17
AB8
B
362 376Right-handed alpha
Helix 18
AB9
B
384 407Right-handed alpha
Helix 19
AC1
B
412 419Right-handed alpha
Helix 20
AC2
B
420 442Right-handed alpha
Helix 21
AC3
B
447 457Right-handed alpha
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There are 2 sheets in PDB entry 6KNR. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
324 327first strand
Strand 2
A
330 332anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
323 327first strand
Strand 2
B
330 333anti-parallel
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