Analysis of interatomic Contacts of Structural Units in PDB entry:
6KNT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6KNT entry

There are 4 chains in PDB entry 6KNT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP -1GLY 244
B
 ASP -1GLU 243
C
 PRO 0GLU 243
D
 PRO 0GLU 243
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 6KNT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
38 44Right-handed alpha
Helix 2
AA2
A
48 52Right-handed 310
Helix 3
AA3
A
61 66Right-handed alpha
Helix 4
AA4
A
67 82Right-handed alpha
Helix 5
AA5
A
96 102Right-handed alpha
Helix 6
AA6
A
161 167Right-handed alpha
Helix 7
AA7
A
191 203Right-handed alpha
Helix 8
AA8
A
217 227Right-handed alpha
Helix 9
AA9
B
38 47Right-handed alpha
Helix 10
AB1
B
48 52Right-handed 310
Helix 11
AB2
B
61 66Right-handed alpha
Helix 12
AB3
B
67 81Right-handed alpha
Helix 13
AB4
B
96 102Right-handed alpha
Helix 14
AB5
B
161 167Right-handed alpha
Helix 15
AB6
B
191 203Right-handed alpha
Helix 16
AB7
B
217 226Right-handed alpha
Helix 17
AB8
C
38 44Right-handed alpha
Helix 18
AB9
C
48 52Right-handed 310
Helix 19
AC1
C
61 66Right-handed alpha
Helix 20
AC2
C
67 81Right-handed alpha
Helix 21
AC3
C
96 102Right-handed alpha
Helix 22
AC4
C
161 166Right-handed alpha
Helix 23
AC5
C
191 203Right-handed alpha
Helix 24
AC6
C
218 226Right-handed alpha
Helix 25
AC7
D
38 47Right-handed alpha
Helix 26
AC8
D
48 52Right-handed 310
Helix 27
AC9
D
61 66Right-handed alpha
Helix 28
AD1
D
67 81Right-handed alpha
Helix 29
AD2
D
96 102Right-handed alpha
Helix 30
AD3
D
161 167Right-handed alpha
Helix 31
AD4
D
191 203Right-handed alpha
Helix 32
AD5
D
218 227Right-handed alpha
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There are 8 sheets in PDB entry 6KNT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 113first strand
Strand 2
A
88 92parallel
Strand 3
A
54 56parallel
Strand 4
A
29 33parallel
Strand 5
A
21 26anti-parallel
Strand 6
A
1 7anti-parallel
Strand 7
A
241 244anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 122first strand
Strand 2
A
125 131anti-parallel
Strand 3
A
139 144anti-parallel
Strand 4
A
149 152anti-parallel
Strand 5
A
171 175parallel
Strand 6
A
206 210parallel
Strand 7
A
232 235parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
109 113first strand
Strand 2
B
88 92parallel
Strand 3
B
54 56parallel
Strand 4
B
29 33parallel
Strand 5
B
21 26anti-parallel
Strand 6
B
1 7anti-parallel
Strand 7
B
241 242anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
120 122first strand
Strand 2
B
125 131anti-parallel
Strand 3
B
139 144anti-parallel
Strand 4
B
149 152anti-parallel
Strand 5
B
171 175parallel
Strand 6
B
206 210parallel
Strand 7
B
232 235parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
109 113first strand
Strand 2
C
88 92parallel
Strand 3
C
54 56parallel
Strand 4
C
29 33parallel
Strand 5
C
21 26anti-parallel
Strand 6
C
2 7anti-parallel
Strand 7
C
241 242anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
120 122first strand
Strand 2
C
125 131anti-parallel
Strand 3
C
139 144anti-parallel
Strand 4
C
149 152anti-parallel
Strand 5
C
171 175parallel
Strand 6
C
206 210parallel
Strand 7
C
232 235parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
109 113first strand
Strand 2
D
88 92parallel
Strand 3
D
54 56parallel
Strand 4
D
29 35parallel
Strand 5
D
21 26anti-parallel
Strand 6
D
2 7anti-parallel
Strand 7
D
241 242anti-parallel
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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
120 122first strand
Strand 2
D
125 131anti-parallel
Strand 3
D
139 144anti-parallel
Strand 4
D
149 152anti-parallel
Strand 5
D
171 175parallel
Strand 6
D
206 210parallel
Strand 7
D
232 235parallel
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