Analysis of interatomic Contacts of Structural Units in PDB entry:
6KNW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6KNW entry

There are 2 chains in PDB entry 6KNW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 211GLU 460
C
 GLU 741ASP 750
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 15 helices in PDB entry 6KNW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
215 233Right-handed alpha
Helix 2
AA2
A
235 239Right-handed 310
Helix 3
AA3
A
265 289Right-handed alpha
Helix 4
AA4
A
290 295Right-handed alpha
Helix 5
AA5
A
297 319Right-handed alpha
Helix 6
AA6
A
338 344Right-handed alpha
Helix 7
AA7
A
347 361Right-handed alpha
Helix 8
AA8
A
362 364Right-handed 310
Helix 9
AA9
A
366 379Right-handed alpha
Helix 10
AB1
A
388 411Right-handed alpha
Helix 11
AB2
A
416 435Right-handed alpha
Helix 12
AB3
A
438 443Right-handed alpha
Helix 13
AB4
A
447 451Right-handed 310
Helix 14
AB5
A
452 460Right-handed alpha
Helix 15
AB6
C
742 749Right-handed alpha
Back to top of page

There is 1 sheet (AA1) in PDB entry 6KNW.

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
244 245first strand
Strand 2
A
334 337parallel
Strand 3
A
327 330anti-parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il