Analysis of interatomic Contacts of Structural Units in PDB entry:
6KO5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6KO5 entry

There are 3 chains in PDB entry 6KO5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 1002	GLY 339
H	GLU 1	ARG 218
L	ASP 1	CYS 219

There are 23 helices in PDB entry 6KO5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1002	1019	Right-handed alpha
Helix 2	AA2	A	1022	1043	Right-handed alpha
Helix 3	AA3	A	1045	1049	Right-handed 310
Helix 4	AA4	A	1055	1082	Right-handed alpha
Helix 5	AA5	A	1083	1105	Right-handed alpha
Helix 6	AA6	A	40	70	Right-handed alpha
Helix 7	AA7	A	71	75	Right-handed 310
Helix 8	AA8	A	76	105	Right-handed alpha
Helix 9	AA9	A	112	147	Right-handed alpha
Helix 10	AB1	A	149	154	Right-handed alpha
Helix 11	AB2	A	156	175	Right-handed alpha
Helix 12	AB3	A	177	181	Right-handed alpha
Helix 13	AB4	A	191	196	Right-handed alpha
Helix 14	AB5	A	202	207	Right-handed alpha
Helix 15	AB6	A	208	240	Right-handed alpha
Helix 16	AB7	A	254	290	Right-handed alpha
Helix 17	AB8	A	302	327	Right-handed alpha
Helix 18	AB9	A	327	339	Right-handed alpha
Helix 19	AC1	H	87	91	Right-handed 310
Helix 20	AC2	H	205	208	Right-handed 310
Helix 21	AC3	L	85	89	Right-handed 310
Helix 22	AC4	L	126	133	Right-handed alpha
Helix 23	AC5	L	188	192	Right-handed alpha

There are 13 sheets in PDB entry 6KO5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	182	185	first strand
Strand 2	A	197	200	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	112	116	parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	33	40	anti-parallel
Strand 5	H	44	51	anti-parallel
Strand 6	H	58	60	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	112	116	parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	106	108	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	125	129	first strand
Strand 2	H	140	150	anti-parallel
Strand 3	H	179	189	anti-parallel
Strand 4	H	168	170	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	125	129	first strand
Strand 2	H	140	150	anti-parallel
Strand 3	H	179	189	anti-parallel
Strand 4	H	174	176	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	156	159	first strand
Strand 2	H	198	204	anti-parallel
Strand 3	H	209	215	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	76	81	anti-parallel
Strand 4	L	68	73	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	107	111	parallel
Strand 3	L	91	96	anti-parallel
Strand 4	L	39	44	anti-parallel
Strand 5	L	51	55	anti-parallel
Strand 6	L	59	60	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	13	first strand
Strand 2	L	107	111	parallel
Strand 3	L	91	96	anti-parallel
Strand 4	L	102	103	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	30	31	first strand
Strand 2	L	36	37	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	119	123	first strand
Strand 2	L	134	144	anti-parallel
Strand 3	L	178	187	anti-parallel
Strand 4	L	164	168	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	158	160	first strand
Strand 2	L	149	155	anti-parallel
Strand 3	L	196	203	anti-parallel
Strand 4	L	210	215	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6KO5

Analysis of interatomic Contacts of Structural Units in PDB entry:
6KO5