Analysis of interatomic Contacts of Structural Units in PDB entry:
6KOB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6KOB entry

There are 5 chains in PDB entry 6KOB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 14TYR 633
B
 GLN 16PHE 288
C
 GLY 20TYR 197
D
 UNK 0ILE 95
G
 GLY 20GLN 170
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 83 helices in PDB entry 6KOB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 35Right-handed alpha
Helix 2
AA2
A
52 82Right-handed alpha
Helix 3
AA3
A
91 106Right-handed alpha
Helix 4
AA4
A
110 127Right-handed alpha
Helix 5
AA5
A
136 154Right-handed alpha
Helix 6
AA6
A
169 173Right-handed 310
Helix 7
AA7
A
179 211Right-handed alpha
Helix 8
AA8
A
223 238Right-handed alpha
Helix 9
AA9
A
239 254Right-handed alpha
Helix 10
AB1
A
269 286Right-handed alpha
Helix 11
AB2
A
287 301Right-handed alpha
Helix 12
AB3
A
312 322Right-handed alpha
Helix 13
AB4
A
326 330Right-handed 310
Helix 14
AB5
A
338 350Right-handed alpha
Helix 15
AB6
A
355 359Right-handed 310
Helix 16
AB7
A
374 399Right-handed alpha
Helix 17
AB8
A
399 404Right-handed alpha
Helix 18
AB9
A
410 435Right-handed alpha
Helix 19
AC1
A
445 474Right-handed alpha
Helix 20
AC2
A
489 504Right-handed alpha
Helix 21
AC3
A
505 514Right-handed alpha
Helix 22
AC4
A
559 564Right-handed alpha
Helix 23
AC5
A
587 605Right-handed alpha
Helix 24
AC6
A
613 629Right-handed alpha
Helix 25
AC7
B
18 39Right-handed alpha
Helix 26
AC8
B
66 72Right-handed alpha
Helix 27
AC9
B
74 80Right-handed alpha
Helix 28
AD1
B
86 91Right-handed alpha
Helix 29
AD2
B
205 217Right-handed alpha
Helix 30
AD3
B
225 230Right-handed alpha
Helix 31
AD4
B
259 264Right-handed alpha
Helix 32
AD5
C
22 48Right-handed alpha
Helix 33
AD6
C
61 81Right-handed alpha
Helix 34
AD7
C
95 121Right-handed alpha
Helix 35
AD8
C
131 141Right-handed alpha
Helix 36
AD9
C
141 159Right-handed alpha
Helix 37
AE1
C
160 162Right-handed 310
Helix 38
AE2
C
173 197Right-handed alpha
Helix 39
AE3
D
1 21Right-handed alpha
Helix 40
AE4
D
51 63Right-handed alpha
Helix 41
AE5
D
72 78Right-handed alpha
Helix 42
AE6
D
78 93Right-handed alpha
Helix 43
AE7
G
22 48Right-handed alpha
Helix 44
AE8
G
61 81Right-handed alpha
Helix 45
AE9
G
95 121Right-handed alpha
Helix 46
AF1
G
131 141Right-handed alpha
Helix 47
AF2
G
141 159Right-handed alpha
Helix 48
AF3
G
160 162Right-handed 310
Helix 49
AF4
G
173 197Right-handed alpha
Helix 50
AF5
H
2 21Right-handed alpha
Helix 51
AF6
H
51 63Right-handed alpha
Helix 52
AF7
H
72 93Right-handed alpha
Helix 53
AF8
F
18 39Right-handed alpha
Helix 54
AF9
F
66 71Right-handed alpha
Helix 55
AG1
F
74 80Right-handed alpha
Helix 56
AG2
F
86 91Right-handed alpha
Helix 57
AG3
F
205 217Right-handed alpha
Helix 58
AG4
F
225 230Right-handed alpha
Helix 59
AG5
F
259 264Right-handed alpha
Helix 60
AG6
E
16 35Right-handed alpha
Helix 61
AG7
E
52 82Right-handed alpha
Helix 62
AG8
E
91 106Right-handed alpha
Helix 63
AG9
E
110 127Right-handed alpha
Helix 64
AH1
E
136 154Right-handed alpha
Helix 65
AH2
E
169 173Right-handed 310
Helix 66
AH3
E
179 211Right-handed alpha
Helix 67
AH4
E
223 238Right-handed alpha
Helix 68
AH5
E
239 254Right-handed alpha
Helix 69
AH6
E
269 286Right-handed alpha
Helix 70
AH7
E
287 301Right-handed alpha
Helix 71
AH8
E
312 322Right-handed alpha
Helix 72
AH9
E
326 330Right-handed 310
Helix 73
AI1
E
338 350Right-handed alpha
Helix 74
AI2
E
355 359Right-handed 310
Helix 75
AI3
E
374 399Right-handed alpha
Helix 76
AI4
E
399 404Right-handed alpha
Helix 77
AI5
E
410 435Right-handed alpha
Helix 78
AI6
E
445 474Right-handed alpha
Helix 79
AI7
E
489 504Right-handed alpha
Helix 80
AI8
E
505 514Right-handed alpha
Helix 81
AI9
E
559 564Right-handed alpha
Helix 82
AJ1
E
587 605Right-handed alpha
Helix 83
AJ2
E
613 629Right-handed alpha
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There are 6 sheets in PDB entry 6KOB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
126 129first strand
Strand 2
B
117 121anti-parallel
Strand 3
B
106 112anti-parallel
Strand 4
B
140 146parallel
Strand 5
B
170 174anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
131 135first strand
Strand 2
B
200 204parallel
Strand 3
B
180 182anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
151 152first strand
Strand 2
B
163 164anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
126 129first strand
Strand 2
F
117 121anti-parallel
Strand 3
F
106 112anti-parallel
Strand 4
F
140 146parallel
Strand 5
F
170 174anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
131 135first strand
Strand 2
F
200 204parallel
Strand 3
F
180 182anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
151 152first strand
Strand 2
F
163 164anti-parallel
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