Analysis of interatomic Contacts of Structural Units in PDB entry:
6KOG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6KOG entry

There are 2 chains in PDB entry 6KOG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 6PHE 463
B
 ASN 6PHE 463
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 6KOG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 32Right-handed alpha
Helix 2
AA2
A
64 69Right-handed 310
Helix 3
AA3
A
70 75Right-handed 310
Helix 4
AA4
A
77 82Right-handed alpha
Helix 5
AA5
A
85 104Right-handed alpha
Helix 6
AA6
A
145 150Right-handed alpha
Helix 7
AA7
A
157 167Right-handed alpha
Helix 8
AA8
A
177 179Right-handed 310
Helix 9
AA9
A
180 195Right-handed alpha
Helix 10
AB1
A
259 266Right-handed alpha
Helix 11
AB2
A
293 309Right-handed alpha
Helix 12
AB3
A
309 315Right-handed alpha
Helix 13
AB4
A
326 346Right-handed alpha
Helix 14
AB5
A
370 375Right-handed alpha
Helix 15
AB6
A
377 379Right-handed 310
Helix 16
AB7
A
380 396Right-handed alpha
Helix 17
AB8
A
408 412Right-handed 310
Helix 18
AB9
A
451 456Right-handed 310
Helix 19
AC1
B
22 32Right-handed alpha
Helix 20
AC2
B
64 69Right-handed 310
Helix 21
AC3
B
70 75Right-handed 310
Helix 22
AC4
B
77 82Right-handed alpha
Helix 23
AC5
B
85 103Right-handed alpha
Helix 24
AC6
B
104 106Right-handed 310
Helix 25
AC7
B
145 150Right-handed alpha
Helix 26
AC8
B
157 167Right-handed alpha
Helix 27
AC9
B
177 179Right-handed 310
Helix 28
AD1
B
180 195Right-handed alpha
Helix 29
AD2
B
259 265Right-handed alpha
Helix 30
AD3
B
293 309Right-handed alpha
Helix 31
AD4
B
309 315Right-handed alpha
Helix 32
AD5
B
326 344Right-handed alpha
Helix 33
AD6
B
370 375Right-handed alpha
Helix 34
AD7
B
377 379Right-handed 310
Helix 35
AD8
B
380 396Right-handed alpha
Helix 36
AD9
B
408 412Right-handed 310
Helix 37
AE1
B
451 455Right-handed 310
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There are 7 sheets in PDB entry 6KOG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 22 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
418 420first strand
Strand 2
A
365 368parallel
Strand 3
A
316 320parallel
Strand 4
A
432 439parallel
Strand 5
A
443 450anti-parallel
Strand 6
A
271 280anti-parallel
Strand 7
A
8 16anti-parallel
Strand 8
A
250 258anti-parallel
Strand 9
A
200 207anti-parallel
Strand 10
A
115 121parallel
Strand 11
A
172 176parallel
Strand 12
B
172 176anti-parallel
Strand 13
B
115 121parallel
Strand 14
B
200 207parallel
Strand 15
B
250 258anti-parallel
Strand 16
B
8 16anti-parallel
Strand 17
B
271 280anti-parallel
Strand 18
B
443 450anti-parallel
Strand 19
B
432 439anti-parallel
Strand 20
B
316 320parallel
Strand 21
B
365 368parallel
Strand 22
B
418 420parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 39first strand
Strand 2
A
59 60anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 57first strand
Strand 2
A
216 219anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
397 398first strand
Strand 2
A
425 426anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
38 39first strand
Strand 2
B
59 60anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
54 57first strand
Strand 2
B
216 219anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
397 398first strand
Strand 2
B
425 426anti-parallel
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