Analysis of interatomic Contacts of Structural Units in PDB entry:
6KP1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6KP1 entry

There are 2 chains in PDB entry 6KP1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 36	GLY 469
B	GLN 36	VAL 468

There are 24 helices in PDB entry 6KP1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	168	172	Right-handed 310
Helix 2	AA2	A	224	228	Right-handed 310
Helix 3	AA3	A	269	283	Right-handed alpha
Helix 4	AA4	A	313	315	Right-handed 310
Helix 5	AA5	A	316	329	Right-handed alpha
Helix 6	AA6	A	337	340	Right-handed 310
Helix 7	AA7	A	341	359	Right-handed alpha
Helix 8	AA8	A	362	375	Right-handed alpha
Helix 9	AA9	A	386	390	Right-handed 310
Helix 10	AB1	A	392	426	Right-handed alpha
Helix 11	AB2	A	432	445	Right-handed alpha
Helix 12	AB3	A	445	457	Right-handed alpha
Helix 13	AB4	B	168	172	Right-handed 310
Helix 14	AB5	B	224	228	Right-handed 310
Helix 15	AB6	B	269	283	Right-handed alpha
Helix 16	AB7	B	313	315	Right-handed 310
Helix 17	AB8	B	316	327	Right-handed alpha
Helix 18	AB9	B	337	340	Right-handed 310
Helix 19	AC1	B	341	359	Right-handed alpha
Helix 20	AC2	B	362	375	Right-handed alpha
Helix 21	AC3	B	386	390	Right-handed 310
Helix 22	AC4	B	392	426	Right-handed alpha
Helix 23	AC5	B	432	444	Right-handed alpha
Helix 24	AC6	B	445	457	Right-handed alpha

There are 10 sheets in PDB entry 6KP1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	104	105	first strand
Strand 2	A	95	101	anti-parallel
Strand 3	A	129	137	anti-parallel
Strand 4	A	70	80	anti-parallel
Strand 5	A	51	61	anti-parallel
Strand 6	A	183	192	parallel
Strand 7	A	212	223	anti-parallel
Strand 8	A	202	209	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	84	90	first strand
Strand 2	A	114	123	anti-parallel
Strand 3	A	107	111	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	152	156	first strand
Strand 2	A	159	163	anti-parallel
Strand 3	A	230	233	anti-parallel
Strand 4	A	196	199	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	235	245	first strand
Strand 2	A	248	257	anti-parallel
Strand 3	A	289	290	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	235	245	first strand
Strand 2	A	248	257	anti-parallel
Strand 3	A	292	295	parallel
Strand 4	A	308	311	parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	104	105	first strand
Strand 2	B	95	101	anti-parallel
Strand 3	B	129	137	anti-parallel
Strand 4	B	70	80	anti-parallel
Strand 5	B	51	61	anti-parallel
Strand 6	B	183	192	parallel
Strand 7	B	212	223	anti-parallel
Strand 8	B	202	209	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	90	first strand
Strand 2	B	114	123	anti-parallel
Strand 3	B	107	111	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	152	156	first strand
Strand 2	B	159	163	anti-parallel
Strand 3	B	230	233	anti-parallel
Strand 4	B	196	199	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	235	245	first strand
Strand 2	B	248	257	anti-parallel
Strand 3	B	289	290	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	235	245	first strand
Strand 2	B	248	257	anti-parallel
Strand 3	B	292	295	parallel
Strand 4	B	308	311	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6KP1

Analysis of interatomic Contacts of Structural Units in PDB entry:
6KP1