Analysis of interatomic Contacts of Structural Units in PDB entry:
6KPD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6KPD entry

There are 2 chains in PDB entry 6KPD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 LEU 45LYS 482
B
 SER 351MET 364
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 6KPD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
46 67Right-handed alpha
Helix 2
AA2
C
70 82Right-handed alpha
Helix 3
AA3
C
89 108Right-handed alpha
Helix 4
AA4
C
110 118Right-handed alpha
Helix 5
AA5
C
127 141Right-handed alpha
Helix 6
AA6
C
142 159Right-handed alpha
Helix 7
AA7
C
175 188Right-handed alpha
Helix 8
AA8
C
203 221Right-handed alpha
Helix 9
AA9
C
258 262Right-handed 310
Helix 10
AB1
C
328 338Right-handed alpha
Helix 11
AB2
C
357 380Right-handed alpha
Helix 12
AB3
C
384 394Right-handed alpha
Helix 13
AB4
C
394 404Right-handed alpha
Helix 14
AB5
C
406 410Right-handed 310
Helix 15
AB6
C
416 427Right-handed alpha
Helix 16
AB7
C
435 446Right-handed alpha
Helix 17
AB8
B
353 364Right-handed alpha
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There are 2 sheets in PDB entry 6KPD. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
225 231first strand
Strand 2
C
194 201parallel
Strand 3
C
164 170parallel
Strand 4
C
250 255parallel
Strand 5
C
343 349parallel
Strand 6
C
470 480anti-parallel
Strand 7
C
429 432anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
225 231first strand
Strand 2
C
194 201parallel
Strand 3
C
164 170parallel
Strand 4
C
250 255parallel
Strand 5
C
343 349parallel
Strand 6
C
470 480anti-parallel
Strand 7
C
462 467anti-parallel
Strand 8
C
454 459anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il