Analysis of interatomic Contacts of Structural Units in PDB entry:
6KPM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6KPM entry

There is 1 chain in PDB entry 6KPM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 21PRO 315
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 6KPM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
33 45Right-handed alpha
Helix 2
AA2
A
57 59Right-handed 310
Helix 3
AA3
A
69 73Right-handed 310
Helix 4
AA4
A
89 99Right-handed alpha
Helix 5
AA5
A
99 107Right-handed alpha
Helix 6
AA6
A
118 121Right-handed 310
Helix 7
AA7
A
128 145Right-handed alpha
Helix 8
AA8
A
160 175Right-handed alpha
Helix 9
AA9
A
198 205Right-handed alpha
Helix 10
AB1
A
206 208Right-handed 310
Helix 11
AB2
A
219 221Right-handed 310
Helix 12
AB3
A
222 231Right-handed alpha
Helix 13
AB4
A
232 234Right-handed 310
Helix 14
AB5
A
235 237Right-handed 310
Helix 15
AB6
A
259 262Right-handed 310
Helix 16
AB7
A
263 271Right-handed alpha
Helix 17
AB8
A
285 289Right-handed 310
Helix 18
AB9
A
303 314Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 6KPM.

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 55first strand
Strand 2
A
79 83parallel
Strand 3
A
110 116parallel
Strand 4
A
150 155parallel
Strand 5
A
187 192parallel
Strand 6
A
210 214parallel
Strand 7
A
239 244parallel
Strand 8
A
280 284parallel
Strand 9
A
49 55parallel
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