Analysis of interatomic Contacts of Structural Units in PDB entry:
6KQB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6KQB entry

There are 2 chains in PDB entry 6KQB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 310
B
 MET 1GLY 310
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 6KQB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 29Right-handed alpha
Helix 2
AA2
A
39 45Right-handed alpha
Helix 3
AA3
A
45 62Right-handed alpha
Helix 4
AA4
A
63 65Right-handed 310
Helix 5
AA5
A
66 76Right-handed alpha
Helix 6
AA6
A
82 88Right-handed alpha
Helix 7
AA7
A
100 115Right-handed alpha
Helix 8
AA8
A
129 138Right-handed 310
Helix 9
AA9
A
139 141Right-handed 310
Helix 10
AB1
A
167 180Right-handed alpha
Helix 11
AB2
A
196 214Right-handed alpha
Helix 12
AB3
A
218 231Right-handed alpha
Helix 13
AB4
A
235 244Right-handed alpha
Helix 14
AB5
A
244 255Right-handed alpha
Helix 15
AB6
A
257 273Right-handed alpha
Helix 16
AB7
A
277 281Right-handed 310
Helix 17
AB8
A
298 301Right-handed 310
Helix 18
AB9
B
16 29Right-handed alpha
Helix 19
AC1
B
39 45Right-handed alpha
Helix 20
AC2
B
46 62Right-handed alpha
Helix 21
AC3
B
63 65Right-handed 310
Helix 22
AC4
B
66 76Right-handed alpha
Helix 23
AC5
B
82 89Right-handed alpha
Helix 24
AC6
B
100 115Right-handed alpha
Helix 25
AC7
B
129 138Right-handed 310
Helix 26
AC8
B
139 141Right-handed 310
Helix 27
AC9
B
167 181Right-handed alpha
Helix 28
AD1
B
196 214Right-handed alpha
Helix 29
AD2
B
218 231Right-handed alpha
Helix 30
AD3
B
235 244Right-handed alpha
Helix 31
AD4
B
244 255Right-handed alpha
Helix 32
AD5
B
257 273Right-handed alpha
Helix 33
AD6
B
277 281Right-handed 310
Helix 34
AD7
B
298 301Right-handed 310
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There are 4 sheets in PDB entry 6KQB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 80first strand
Strand 2
A
32 36parallel
Strand 3
A
9 13parallel
Strand 4
A
92 95parallel
Strand 5
A
120 123parallel
Strand 6
A
143 147parallel
Strand 7
A
157 162anti-parallel
Strand 8
A
184 188parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
285 287first strand
Strand 2
A
293 296anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 80first strand
Strand 2
B
32 36parallel
Strand 3
B
9 13parallel
Strand 4
B
92 95parallel
Strand 5
B
120 123parallel
Strand 6
B
143 147parallel
Strand 7
B
157 162anti-parallel
Strand 8
B
184 188parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
285 287first strand
Strand 2
B
293 296anti-parallel
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