Analysis of interatomic Contacts of Structural Units in PDB entry:
6KQP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6KQP entry

There is 1 chain in PDB entry 6KQP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 1864VAL 2083
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 6KQP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1888 1892Right-handed 310
Helix 2
AA2
A
1911 1916Right-handed alpha
Helix 3
AA3
A
1927 1931Right-handed 310
Helix 4
AA4
A
1934 1939Right-handed alpha
Helix 5
AA5
A
1977 1991Right-handed alpha
Helix 6
AA6
A
2015 2019Right-handed 310
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There are 5 sheets in PDB entry 6KQP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1871 1872first strand
Strand 2
A
2005 2013parallel
Strand 3
A
1973 1976anti-parallel
Strand 4
A
1877 1878parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1871 1872first strand
Strand 2
A
2005 2013parallel
Strand 3
A
1998 2002anti-parallel
Strand 4
A
2062 2063anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1944 1948first strand
Strand 2
A
1954 1958anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1967 1970first strand
Strand 2
A
2037 2044anti-parallel
Strand 3
A
2027 2034anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2020 2021first strand
Strand 2
A
2055 2056parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il