Analysis of interatomic Contacts of Structural Units in PDB entry:
6KQT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6KQT entry

There is 1 chain in PDB entry 6KQT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 7ILE 663
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 6KQT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 22Right-handed alpha
Helix 2
AA2
A
28 47Right-handed alpha
Helix 3
AA3
A
54 60Right-handed 310
Helix 4
AA4
A
61 71Right-handed alpha
Helix 5
AA5
A
77 83Right-handed alpha
Helix 6
AA6
A
94 113Right-handed alpha
Helix 7
AA7
A
127 138Right-handed alpha
Helix 8
AA8
A
139 142Right-handed 310
Helix 9
AA9
A
151 178Right-handed alpha
Helix 10
AB1
A
201 223Right-handed alpha
Helix 11
AB2
A
266 273Right-handed alpha
Helix 12
AB3
A
433 438Right-handed alpha
Helix 13
AB4
A
467 472Right-handed 310
Helix 14
AB5
A
477 485Right-handed alpha
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There are 7 sheets in PDB entry 6KQT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
117 118first strand
Strand 2
A
121 122anti-parallel
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There are 13 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
244 247first strand
Strand 2
A
280 284parallel
Strand 3
A
306 311parallel
Strand 4
A
358 361parallel
Strand 5
A
396 403parallel
Strand 6
A
441 448parallel
Strand 7
A
487 492parallel
Strand 8
A
513 515parallel
Strand 9
A
554 556parallel
Strand 10
A
581 583parallel
Strand 11
A
606 608parallel
Strand 12
A
629 631parallel
Strand 13
A
654 656parallel
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There are 12 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
288 290first strand
Strand 2
A
318 320parallel
Strand 3
A
364 367parallel
Strand 4
A
406 411parallel
Strand 5
A
451 456parallel
Strand 6
A
495 497parallel
Strand 7
A
518 520parallel
Strand 8
A
559 561parallel
Strand 9
A
586 588parallel
Strand 10
A
611 613parallel
Strand 11
A
634 637parallel
Strand 12
A
659 662parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
294 296first strand
Strand 2
A
343 353parallel
Strand 3
A
326 330anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
294 296first strand
Strand 2
A
343 353parallel
Strand 3
A
383 391parallel
Strand 4
A
422 428parallel
Strand 5
A
458 465parallel
Strand 6
A
504 507parallel
Strand 7
A
545 548parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
572 574first strand
Strand 2
A
595 598parallel
Strand 3
A
620 623parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
577 578first strand
Strand 2
A
602 603parallel
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