Analysis of interatomic Contacts of Structural Units in PDB entry:
6KQW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6KQW entry

There is 1 chain in PDB entry 6KQW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 6LYS 387
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 6KQW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 30Right-handed alpha
Helix 2
AA2
A
42 49Right-handed alpha
Helix 3
AA3
A
89 95Right-handed alpha
Helix 4
AA4
A
109 115Right-handed alpha
Helix 5
AA5
A
183 187Right-handed 310
Helix 6
AA6
A
189 193Right-handed 310
Helix 7
AA7
A
234 246Right-handed alpha
Helix 8
AA8
A
261 265Right-handed 310
Helix 9
AA9
A
279 285Right-handed alpha
Helix 10
AB1
A
295 305Right-handed alpha
Helix 11
AB2
A
315 328Right-handed alpha
Helix 12
AB3
A
335 339Right-handed 310
Helix 13
AB4
A
340 353Right-handed alpha
Helix 14
AB5
A
354 371Right-handed alpha
Helix 15
AB6
A
372 385Right-handed alpha
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There are 3 sheets in PDB entry 6KQW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 9first strand
Strand 2
A
35 38parallel
Strand 3
A
52 55parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 106first strand
Strand 2
A
123 127parallel
Strand 3
A
178 180parallel
Strand 4
A
197 199parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
272 275first strand
Strand 2
A
251 255parallel
Strand 3
A
222 226parallel
Strand 4
A
289 292parallel
Strand 5
A
309 311parallel
Strand 6
A
331 333parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il