Analysis of interatomic Contacts of Structural Units in PDB entry:
6KQX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6KQX entry

There is 1 chain in PDB entry 6KQX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 5MET 385
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 6KQX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 29Right-handed alpha
Helix 2
AA2
A
42 49Right-handed alpha
Helix 3
AA3
A
90 94Right-handed 310
Helix 4
AA4
A
95 99Right-handed 310
Helix 5
AA5
A
109 119Right-handed alpha
Helix 6
AA6
A
183 187Right-handed 310
Helix 7
AA7
A
189 193Right-handed 310
Helix 8
AA8
A
234 245Right-handed alpha
Helix 9
AA9
A
261 265Right-handed 310
Helix 10
AB1
A
279 285Right-handed alpha
Helix 11
AB2
A
295 305Right-handed alpha
Helix 12
AB3
A
315 328Right-handed alpha
Helix 13
AB4
A
335 339Right-handed 310
Helix 14
AB5
A
340 353Right-handed alpha
Helix 15
AB6
A
354 371Right-handed alpha
Helix 16
AB7
A
372 384Right-handed alpha
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There are 2 sheets in PDB entry 6KQX. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 53first strand
Strand 2
A
34 37parallel
Strand 3
A
6 9parallel
Strand 4
A
102 106parallel
Strand 5
A
123 127parallel
Strand 6
A
178 180parallel
Strand 7
A
197 199parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
272 275first strand
Strand 2
A
251 255parallel
Strand 3
A
222 226parallel
Strand 4
A
289 292parallel
Strand 5
A
309 311parallel
Strand 6
A
331 333parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il