Analysis of interatomic Contacts of Structural Units in PDB entry:
6KQY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6KQY entry

There is 1 chain in PDB entry 6KQY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 7PHE 1061
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 6KQY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 28Right-handed alpha
Helix 2
AA2
A
60 78Right-handed alpha
Helix 3
AA3
A
95 101Right-handed alpha
Helix 4
AA4
A
101 108Right-handed alpha
Helix 5
AA5
A
158 164Right-handed alpha
Helix 6
AA6
A
169 175Right-handed 310
Helix 7
AA7
A
176 181Right-handed alpha
Helix 8
AA8
A
183 196Right-handed alpha
Helix 9
AA9
A
200 204Right-handed 310
Helix 10
AB1
A
211 228Right-handed alpha
Helix 11
AB2
A
241 245Right-handed 310
Helix 12
AB3
A
276 283Right-handed 310
Helix 13
AB4
A
295 302Right-handed 310
Helix 14
AB5
A
327 336Right-handed alpha
Helix 15
AB6
A
355 357Right-handed 310
Helix 16
AB7
A
392 395Right-handed 310
Helix 17
AB8
A
396 409Right-handed alpha
Helix 18
AB9
A
409 414Right-handed alpha
Helix 19
AC1
A
440 447Right-handed alpha
Helix 20
AC2
A
457 465Right-handed alpha
Helix 21
AC3
A
469 473Right-handed 310
Helix 22
AC4
A
490 501Right-handed alpha
Helix 23
AC5
A
537 550Right-handed alpha
Helix 24
AC6
A
556 566Right-handed alpha
Helix 25
AC7
A
592 597Right-handed alpha
Helix 26
AC8
A
600 611Right-handed alpha
Helix 27
AC9
A
626 630Right-handed 310
Helix 28
AD1
A
631 640Right-handed alpha
Helix 29
AD2
A
651 666Right-handed alpha
Helix 30
AD3
A
680 692Right-handed alpha
Helix 31
AD4
A
726 735Right-handed alpha
Helix 32
AD5
A
735 745Right-handed alpha
Helix 33
AD6
A
756 780Right-handed alpha
Helix 34
AD7
A
781 784Right-handed 310
Helix 35
AD8
A
791 814Right-handed alpha
Helix 36
AD9
A
816 825Right-handed alpha
Helix 37
AE1
A
825 838Right-handed alpha
Helix 38
AE2
A
844 860Right-handed alpha
Helix 39
AE3
A
863 874Right-handed alpha
Helix 40
AE4
A
879 883Right-handed 310
Helix 41
AE5
A
892 913Right-handed alpha
Helix 42
AE6
A
948 960Right-handed alpha
Helix 43
AE7
A
970 978Right-handed alpha
Helix 44
AE8
A
979 983Right-handed 310
Helix 45
AE9
A
985 989Right-handed 310
Helix 46
AF1
A
1015 1020Right-handed alpha
Helix 47
AF2
A
1023 1029Right-handed alpha
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There are 8 sheets in PDB entry 6KQY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 49first strand
Strand 2
A
670 674parallel
Strand 3
A
703 707parallel
Strand 4
A
551 552parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
231 240first strand
Strand 2
A
522 532anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
348 353first strand
Strand 2
A
312 317anti-parallel
Strand 3
A
323 326anti-parallel
Strand 4
A
287 293parallel
Strand 5
A
261 271anti-parallel
Strand 6
A
359 363anti-parallel
Strand 7
A
372 376anti-parallel
Strand 8
A
305 307parallel
Strand 9
A
388 390anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
348 353first strand
Strand 2
A
312 317anti-parallel
Strand 3
A
323 326anti-parallel
Strand 4
A
287 293parallel
Strand 5
A
261 271anti-parallel
Strand 6
A
504 510anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
432 433first strand
Strand 2
A
476 477anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
574 575first strand
Strand 2
A
590 591anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
710 712first strand
Strand 2
A
753 755parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1036 1037first strand
Strand 2
A
936 939parallel
Strand 3
A
1058 1060anti-parallel
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