Analysis of interatomic Contacts of Structural Units in PDB entry:
6KR0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6KR0 entry

There are 4 chains in PDB entry 6KR0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 25	ILE 260
B	GLU 25	LYS 261
C	GLU 25	LYS 261
D	GLU 25	GLU 259

There are 14 helices in PDB entry 6KR0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	86	89	Right-handed 310
Helix 2	AA2	A	98	100	Right-handed 310
Helix 3	AA3	A	111	115	Right-handed 310
Helix 4	AA4	A	233	237	Right-handed 310
Helix 5	AA5	B	111	115	Right-handed 310
Helix 6	AA6	B	233	237	Right-handed 310
Helix 7	AA7	C	52	56	Right-handed 310
Helix 8	AA8	C	86	89	Right-handed 310
Helix 9	AA9	C	111	115	Right-handed 310
Helix 10	AB1	C	233	237	Right-handed 310
Helix 11	AB2	D	52	56	Right-handed 310
Helix 12	AB3	D	98	100	Right-handed 310
Helix 13	AB4	D	111	115	Right-handed 310
Helix 14	AB5	D	233	237	Right-handed 310

There are 20 sheets in PDB entry 6KR0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	31	first strand
Strand 2	A	42	49	anti-parallel
Strand 3	A	102	107	anti-parallel
Strand 4	A	92	97	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	36	first strand
Strand 2	A	140	144	parallel
Strand 3	A	116	125	anti-parallel
Strand 4	A	56	63	anti-parallel
Strand 5	A	69	76	anti-parallel
Strand 6	A	81	84	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	34	36	first strand
Strand 2	A	140	144	parallel
Strand 3	A	116	125	anti-parallel
Strand 4	A	135	136	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	158	161	first strand
Strand 2	A	173	179	anti-parallel
Strand 3	A	224	229	anti-parallel
Strand 4	A	216	221	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	164	166	first strand
Strand 2	A	256	259	parallel
Strand 3	A	239	244	anti-parallel
Strand 4	A	187	192	anti-parallel
Strand 5	A	199	203	anti-parallel
Strand 6	A	207	208	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	31	first strand
Strand 2	B	42	49	anti-parallel
Strand 3	B	102	107	anti-parallel
Strand 4	B	92	97	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	36	first strand
Strand 2	B	140	144	parallel
Strand 3	B	116	125	anti-parallel
Strand 4	B	56	63	anti-parallel
Strand 5	B	70	76	anti-parallel
Strand 6	B	81	84	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	35	36	first strand
Strand 2	B	140	144	parallel
Strand 3	B	116	125	anti-parallel
Strand 4	B	135	136	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	158	161	first strand
Strand 2	B	173	179	anti-parallel
Strand 3	B	224	229	anti-parallel
Strand 4	B	216	221	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	164	167	first strand
Strand 2	B	256	260	parallel
Strand 3	B	239	244	anti-parallel
Strand 4	B	187	192	anti-parallel
Strand 5	B	199	203	anti-parallel
Strand 6	B	207	208	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	27	31	first strand
Strand 2	C	42	49	anti-parallel
Strand 3	C	102	107	anti-parallel
Strand 4	C	92	97	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	34	36	first strand
Strand 2	C	140	144	parallel
Strand 3	C	116	125	anti-parallel
Strand 4	C	57	63	anti-parallel
Strand 5	C	69	76	anti-parallel
Strand 6	C	81	84	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	34	36	first strand
Strand 2	C	140	144	parallel
Strand 3	C	116	125	anti-parallel
Strand 4	C	131	136	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	158	161	first strand
Strand 2	C	173	179	anti-parallel
Strand 3	C	224	229	anti-parallel
Strand 4	C	216	221	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	164	167	first strand
Strand 2	C	256	260	parallel
Strand 3	C	238	244	anti-parallel
Strand 4	C	187	192	anti-parallel
Strand 5	C	199	203	anti-parallel
Strand 6	C	207	208	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	27	31	first strand
Strand 2	D	41	49	anti-parallel
Strand 3	D	102	108	anti-parallel
Strand 4	D	93	97	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	81	84	first strand
Strand 2	D	70	76	anti-parallel
Strand 3	D	57	63	anti-parallel
Strand 4	D	116	123	anti-parallel
Strand 5	D	135	136	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	81	84	first strand
Strand 2	D	70	76	anti-parallel
Strand 3	D	57	63	anti-parallel
Strand 4	D	116	123	anti-parallel
Strand 5	D	140	142	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	158	161	first strand
Strand 2	D	173	179	anti-parallel
Strand 3	D	224	229	anti-parallel
Strand 4	D	216	221	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	164	166	first strand
Strand 2	D	256	259	parallel
Strand 3	D	239	244	anti-parallel
Strand 4	D	187	192	anti-parallel
Strand 5	D	199	203	anti-parallel
Strand 6	D	207	208	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6KR0

Analysis of interatomic Contacts of Structural Units in PDB entry:
6KR0