Analysis of interatomic Contacts of Structural Units in PDB entry:
6KR1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6KR1 entry

There are 12 chains in PDB entry 6KR1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 6	LEU 181
B	THR 9	LEU 181
C	THR 9	LEU 181
D	THR 5	LEU 181
E	THR 9	LEU 181
F	THR 9	LEU 181
G	LEU 6	LEU 181
H	THR 9	LEU 181
I	THR 9	LEU 181
J	LEU 6	LEU 181
K	THR 9	LEU 181
L	THR 9	LEU 181

There are 55 helices in PDB entry 6KR1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	58	76	Right-handed alpha
Helix 2	AA2	A	79	94	Right-handed alpha
Helix 3	AA3	A	124	126	Right-handed 310
Helix 4	AA4	A	134	149	Right-handed alpha
Helix 5	AA5	A	153	169	Right-handed alpha
Helix 6	AA6	B	58	76	Right-handed alpha
Helix 7	AA7	B	79	94	Right-handed alpha
Helix 8	AA8	B	134	149	Right-handed alpha
Helix 9	AA9	B	153	169	Right-handed alpha
Helix 10	AB1	C	58	76	Right-handed alpha
Helix 11	AB2	C	79	93	Right-handed alpha
Helix 12	AB3	C	134	149	Right-handed alpha
Helix 13	AB4	C	153	169	Right-handed alpha
Helix 14	AB5	D	58	76	Right-handed alpha
Helix 15	AB6	D	79	94	Right-handed alpha
Helix 16	AB7	D	124	126	Right-handed 310
Helix 17	AB8	D	134	149	Right-handed alpha
Helix 18	AB9	D	153	169	Right-handed alpha
Helix 19	AC1	E	58	76	Right-handed alpha
Helix 20	AC2	E	79	94	Right-handed alpha
Helix 21	AC3	E	134	149	Right-handed alpha
Helix 22	AC4	E	153	167	Right-handed alpha
Helix 23	AC5	F	58	76	Right-handed alpha
Helix 24	AC6	F	79	93	Right-handed alpha
Helix 25	AC7	F	96	100	Right-handed 310
Helix 26	AC8	F	134	149	Right-handed alpha
Helix 27	AC9	F	153	169	Right-handed alpha
Helix 28	AD1	G	58	76	Right-handed alpha
Helix 29	AD2	G	79	94	Right-handed alpha
Helix 30	AD3	G	94	99	Right-handed alpha
Helix 31	AD4	G	124	126	Right-handed 310
Helix 32	AD5	G	134	149	Right-handed alpha
Helix 33	AD6	G	153	169	Right-handed alpha
Helix 34	AD7	H	58	76	Right-handed alpha
Helix 35	AD8	H	79	94	Right-handed alpha
Helix 36	AD9	H	134	149	Right-handed alpha
Helix 37	AE1	H	153	167	Right-handed alpha
Helix 38	AE2	I	58	77	Right-handed alpha
Helix 39	AE3	I	79	92	Right-handed alpha
Helix 40	AE4	I	134	149	Right-handed alpha
Helix 41	AE5	I	153	169	Right-handed alpha
Helix 42	AE6	J	58	76	Right-handed alpha
Helix 43	AE7	J	79	92	Right-handed alpha
Helix 44	AE8	J	124	126	Right-handed 310
Helix 45	AE9	J	134	149	Right-handed alpha
Helix 46	AF1	J	153	169	Right-handed alpha
Helix 47	AF2	K	58	76	Right-handed alpha
Helix 48	AF3	K	79	94	Right-handed alpha
Helix 49	AF4	K	96	100	Right-handed 310
Helix 50	AF5	K	134	149	Right-handed alpha
Helix 51	AF6	K	153	168	Right-handed alpha
Helix 52	AF7	L	58	77	Right-handed alpha
Helix 53	AF8	L	79	94	Right-handed alpha
Helix 54	AF9	L	134	149	Right-handed alpha
Helix 55	AG1	L	153	169	Right-handed alpha

There are 28 sheets in PDB entry 6KR1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	7	8	first strand
Strand 2	A	28	30	anti-parallel
Strand 3	A	34	37	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	132	first strand
Strand 2	A	10	16	anti-parallel
Strand 3	A	19	24	anti-parallel
Strand 4	A	177	180	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	46	first strand
Strand 2	A	51	55	anti-parallel
Strand 3	A	104	107	anti-parallel
Strand 4	A	112	115	anti-parallel
Strand 5	A	121	122	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	131	first strand
Strand 2	B	11	16	anti-parallel
Strand 3	B	19	24	anti-parallel
Strand 4	B	177	180	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	43	46	first strand
Strand 2	B	51	55	anti-parallel
Strand 3	B	104	107	anti-parallel
Strand 4	B	112	115	anti-parallel
Strand 5	B	121	122	anti-parallel
Strand 6	C	19	30	anti-parallel
Strand 7	C	11	16	anti-parallel
Strand 8	C	128	131	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	36	40	first strand
Strand 2	C	19	30	anti-parallel
Strand 3	C	176	180	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	46	first strand
Strand 2	C	51	55	anti-parallel
Strand 3	C	104	107	anti-parallel
Strand 4	C	112	115	anti-parallel
Strand 5	C	121	122	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	8	first strand
Strand 2	D	28	30	anti-parallel
Strand 3	D	34	37	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	128	132	first strand
Strand 2	D	10	16	anti-parallel
Strand 3	D	19	24	anti-parallel
Strand 4	D	177	180	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	43	46	first strand
Strand 2	D	51	55	anti-parallel
Strand 3	D	104	107	anti-parallel
Strand 4	D	112	115	anti-parallel
Strand 5	D	121	122	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	128	131	first strand
Strand 2	E	11	16	anti-parallel
Strand 3	E	19	24	anti-parallel
Strand 4	E	177	180	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	43	46	first strand
Strand 2	E	51	55	anti-parallel
Strand 3	E	104	107	anti-parallel
Strand 4	E	112	115	anti-parallel
Strand 5	E	121	122	anti-parallel
Strand 6	F	19	30	anti-parallel
Strand 7	F	11	16	anti-parallel
Strand 8	F	128	131	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	36	40	first strand
Strand 2	F	19	30	anti-parallel
Strand 3	F	176	180	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	43	46	first strand
Strand 2	F	51	55	anti-parallel
Strand 3	F	104	107	anti-parallel
Strand 4	F	112	115	anti-parallel
Strand 5	F	121	122	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	7	8	first strand
Strand 2	G	28	30	anti-parallel
Strand 3	G	34	37	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	128	132	first strand
Strand 2	G	10	16	anti-parallel
Strand 3	G	19	24	anti-parallel
Strand 4	G	177	180	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	43	46	first strand
Strand 2	G	51	55	anti-parallel
Strand 3	G	104	107	anti-parallel
Strand 4	G	112	115	anti-parallel
Strand 5	G	121	122	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	36	40	first strand
Strand 2	H	19	30	anti-parallel
Strand 3	H	176	180	anti-parallel

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There are 8 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	128	131	first strand
Strand 2	H	11	16	anti-parallel
Strand 3	H	19	30	anti-parallel
Strand 4	I	121	122	anti-parallel
Strand 5	I	112	115	anti-parallel
Strand 6	I	104	107	anti-parallel
Strand 7	I	51	55	anti-parallel
Strand 8	I	43	46	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	43	46	first strand
Strand 2	H	51	55	anti-parallel
Strand 3	H	104	107	anti-parallel
Strand 4	H	112	115	anti-parallel
Strand 5	H	121	122	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	128	131	first strand
Strand 2	I	11	16	anti-parallel
Strand 3	I	19	25	anti-parallel
Strand 4	I	176	180	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	128	131	first strand
Strand 2	J	11	16	anti-parallel
Strand 3	J	19	24	anti-parallel
Strand 4	J	177	180	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	28	30	first strand
Strand 2	J	34	37	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	43	46	first strand
Strand 2	J	51	55	anti-parallel
Strand 3	J	104	107	anti-parallel
Strand 4	J	112	115	anti-parallel
Strand 5	J	121	122	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	36	40	first strand
Strand 2	K	19	30	anti-parallel
Strand 3	K	176	180	anti-parallel

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There are 8 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	128	132	first strand
Strand 2	K	10	16	anti-parallel
Strand 3	K	19	30	anti-parallel
Strand 4	L	121	122	anti-parallel
Strand 5	L	112	115	anti-parallel
Strand 6	L	104	107	anti-parallel
Strand 7	L	51	55	anti-parallel
Strand 8	L	43	46	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	43	46	first strand
Strand 2	K	51	55	anti-parallel
Strand 3	K	104	107	anti-parallel
Strand 4	K	112	115	anti-parallel
Strand 5	K	121	122	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	128	132	first strand
Strand 2	L	10	16	anti-parallel
Strand 3	L	19	25	anti-parallel
Strand 4	L	176	180	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6KR1

Analysis of interatomic Contacts of Structural Units in PDB entry:
6KR1