Analysis of interatomic Contacts of Structural Units in PDB entry:
6KRJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6KRJ entry

There is 1 chain in PDB entry 6KRJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 2HIS 467
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 6KRJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 14Right-handed alpha
Helix 2
AA2
A
15 17Right-handed 310
Helix 3
AA3
A
19 45Right-handed alpha
Helix 4
AA4
A
107 109Right-handed 310
Helix 5
AA5
A
121 140Right-handed alpha
Helix 6
AA6
A
142 149Right-handed alpha
Helix 7
AA7
A
192 204Right-handed alpha
Helix 8
AA8
A
215 228Right-handed alpha
Helix 9
AA9
A
254 258Right-handed 310
Helix 10
AB1
A
267 271Right-handed 310
Helix 11
AB2
A
278 287Right-handed alpha
Helix 12
AB3
A
296 301Right-handed alpha
Helix 13
AB4
A
301 318Right-handed alpha
Helix 14
AB5
A
319 321Right-handed 310
Helix 15
AB6
A
322 327Right-handed 310
Helix 16
AB7
A
332 342Right-handed alpha
Helix 17
AB8
A
350 366Right-handed alpha
Helix 18
AB9
A
370 404Right-handed alpha
Helix 19
AC1
A
404 410Right-handed alpha
Helix 20
AC2
A
418 424Right-handed alpha
Helix 21
AC3
A
424 440Right-handed alpha
Helix 22
AC4
A
441 444Right-handed 310
Helix 23
AC5
A
456 465Right-handed alpha
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There are 3 sheets in PDB entry 6KRJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 59first strand
Strand 2
A
263 265anti-parallel
Strand 3
A
245 250anti-parallel
Strand 4
A
235 241anti-parallel
Strand 5
A
412 417parallel
Strand 6
A
446 450parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 105first strand
Strand 2
A
83 93anti-parallel
Strand 3
A
71 79anti-parallel
Strand 4
A
151 157parallel
Strand 5
A
208 213parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 165first strand
Strand 2
A
168 171anti-parallel
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