Analysis of interatomic Contacts of Structural Units in PDB entry:
6KRL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6KRL entry

There is 1 chain in PDB entry 6KRL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 20CYS 473
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 6KRL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
45 51Right-handed alpha
Helix 2
AA2
A
57 70Right-handed alpha
Helix 3
AA3
A
120 131Right-handed alpha
Helix 4
AA4
A
144 148Right-handed 310
Helix 5
AA5
A
172 190Right-handed alpha
Helix 6
AA6
A
215 234Right-handed alpha
Helix 7
AA7
A
246 259Right-handed alpha
Helix 8
AA8
A
266 271Right-handed alpha
Helix 9
AA9
A
318 332Right-handed alpha
Helix 10
AB1
A
364 377Right-handed alpha
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There are 3 sheets in PDB entry 6KRL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
445 446first strand
Strand 2
A
432 438anti-parallel
Strand 3
A
450 451anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
445 446first strand
Strand 2
A
432 438anti-parallel
Strand 3
A
465 471anti-parallel
Strand 4
A
405 411anti-parallel
Strand 5
A
393 399anti-parallel
Strand 6
A
382 388anti-parallel
Strand 7
A
22 34anti-parallel
Strand 8
A
417 422parallel
Strand 9
A
456 461anti-parallel
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There are 11 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
361 363first strand
Strand 2
A
352 356anti-parallel
Strand 3
A
337 346parallel
Strand 4
A
292 297parallel
Strand 5
A
273 277parallel
Strand 6
A
238 244parallel
Strand 7
A
196 198parallel
Strand 8
A
135 140parallel
Strand 9
A
79 84parallel
Strand 10
A
37 41parallel
Strand 11
A
337 346parallel
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