Analysis of interatomic Contacts of Structural Units in PDB entry:
6KRZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6KRZ entry

There are 7 chains in PDB entry 6KRZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 0	ASP 371
B	SER 0	CYS 369
C	SER 0	CYS 369
D	GLU 1	ALA 119
E	ASP 1	ASN 107
F	GLU 1	ALA 119
G	ASP 1	ARG 61

There are 57 helices in PDB entry 6KRZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	101	105	Right-handed 310
Helix 2	AA2	A	120	127	Right-handed alpha
Helix 3	AA3	A	128	130	Right-handed 310
Helix 4	AA4	A	134	157	Right-handed alpha
Helix 5	AA5	A	159	163	Right-handed 310
Helix 6	AA6	A	165	193	Right-handed alpha
Helix 7	AA7	A	194	196	Right-handed 310
Helix 8	AA8	A	197	228	Right-handed alpha
Helix 9	AA9	A	231	254	Right-handed alpha
Helix 10	AB1	A	255	262	Right-handed 310
Helix 11	AB2	A	263	277	Right-handed alpha
Helix 12	AB3	A	278	289	Right-handed alpha
Helix 13	AB4	A	292	297	Right-handed alpha
Helix 14	AB5	A	300	320	Right-handed alpha
Helix 15	AB6	A	320	326	Right-handed alpha
Helix 16	AB7	A	335	363	Right-handed alpha
Helix 17	AB8	B	96	100	Right-handed 310
Helix 18	AB9	B	101	105	Right-handed 310
Helix 19	AC1	B	120	127	Right-handed alpha
Helix 20	AC2	B	128	130	Right-handed 310
Helix 21	AC3	B	134	157	Right-handed alpha
Helix 22	AC4	B	159	163	Right-handed 310
Helix 23	AC5	B	165	193	Right-handed alpha
Helix 24	AC6	B	194	196	Right-handed 310
Helix 25	AC7	B	197	228	Right-handed alpha
Helix 26	AC8	B	231	253	Right-handed alpha
Helix 27	AC9	B	254	255	Right-handed 310
Helix 28	AD1	B	256	262	Right-handed 310
Helix 29	AD2	B	263	276	Right-handed alpha
Helix 30	AD3	B	278	289	Right-handed alpha
Helix 31	AD4	B	290	296	Right-handed alpha
Helix 32	AD5	B	299	320	Right-handed alpha
Helix 33	AD6	B	320	326	Right-handed alpha
Helix 34	AD7	B	335	364	Right-handed alpha
Helix 35	AD8	C	101	105	Right-handed 310
Helix 36	AD9	C	120	127	Right-handed alpha
Helix 37	AE1	C	128	130	Right-handed 310
Helix 38	AE2	C	134	157	Right-handed alpha
Helix 39	AE3	C	165	193	Right-handed alpha
Helix 40	AE4	C	194	196	Right-handed 310
Helix 41	AE5	C	197	228	Right-handed alpha
Helix 42	AE6	C	231	255	Right-handed alpha
Helix 43	AE7	C	260	262	Right-handed 310
Helix 44	AE8	C	263	276	Right-handed alpha
Helix 45	AE9	C	278	290	Right-handed alpha
Helix 46	AF1	C	290	297	Right-handed alpha
Helix 47	AF2	C	299	320	Right-handed alpha
Helix 48	AF3	C	320	325	Right-handed alpha
Helix 49	AF4	C	335	363	Right-handed alpha
Helix 50	AF5	D	28	32	Right-handed 310
Helix 51	AF6	D	74	76	Right-handed 310
Helix 52	AF7	D	87	91	Right-handed 310
Helix 53	AF8	F	28	32	Right-handed 310
Helix 54	AF9	F	87	91	Right-handed 310
Helix 55	AG1	G	79	83	Right-handed 310
Helix 56	AG2	H	87	91	Right-handed 310
Helix 57	AG3	I	79	83	Right-handed 310

There are 19 sheets in PDB entry 6KRZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	95	96	first strand
Strand 2	C	112	114	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	6	first strand
Strand 2	D	18	25	anti-parallel
Strand 3	D	78	83	anti-parallel
Strand 4	D	68	73	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	112	116	parallel
Strand 3	D	92	98	anti-parallel
Strand 4	D	34	39	anti-parallel
Strand 5	D	45	51	anti-parallel
Strand 6	D	58	60	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	12	first strand
Strand 2	D	112	116	parallel
Strand 3	D	92	98	anti-parallel
Strand 4	D	107	108	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	4	6	first strand
Strand 2	E	19	25	anti-parallel
Strand 3	E	70	75	anti-parallel
Strand 4	E	62	67	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	14	first strand
Strand 2	E	102	107	parallel
Strand 3	E	84	90	anti-parallel
Strand 4	E	33	38	anti-parallel
Strand 5	E	44	49	anti-parallel
Strand 6	E	53	54	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	14	first strand
Strand 2	E	102	107	parallel
Strand 3	E	84	90	anti-parallel
Strand 4	E	97	98	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	3	6	first strand
Strand 2	F	18	25	anti-parallel
Strand 3	F	78	83	anti-parallel
Strand 4	F	68	73	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	12	first strand
Strand 2	F	112	116	parallel
Strand 3	F	92	98	anti-parallel
Strand 4	F	34	39	anti-parallel
Strand 5	F	45	51	anti-parallel
Strand 6	F	58	60	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	12	first strand
Strand 2	F	112	116	parallel
Strand 3	F	92	98	anti-parallel
Strand 4	F	107	108	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	4	6	first strand
Strand 2	G	19	25	anti-parallel
Strand 3	G	70	75	anti-parallel
Strand 4	G	62	67	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	14	first strand
Strand 2	G	102	107	parallel
Strand 3	G	84	90	anti-parallel
Strand 4	G	33	38	anti-parallel
Strand 5	G	45	49	anti-parallel
Strand 6	G	53	54	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	14	first strand
Strand 2	G	102	107	parallel
Strand 3	G	84	90	anti-parallel
Strand 4	G	97	98	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	112	116	parallel
Strand 3	H	92	98	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	58	60	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	112	116	parallel
Strand 3	H	92	98	anti-parallel
Strand 4	H	107	108	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	4	6	first strand
Strand 2	I	19	25	anti-parallel
Strand 3	I	70	75	anti-parallel
Strand 4	I	62	67	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	14	first strand
Strand 2	I	102	107	parallel
Strand 3	I	84	90	anti-parallel
Strand 4	I	33	38	anti-parallel
Strand 5	I	45	49	anti-parallel
Strand 6	I	53	54	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	14	first strand
Strand 2	I	102	107	parallel
Strand 3	I	84	90	anti-parallel
Strand 4	I	97	98	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6KRZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
6KRZ