Analysis of interatomic Contacts of Structural Units in PDB entry:
6KS5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6KS5 entry

There are 2 chains in PDB entry 6KS5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 15ILE 337
B
 SER 11SER 335
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 32 helices in PDB entry 6KS5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 27Right-handed 310
Helix 2
AA2
A
28 41Right-handed alpha
Helix 3
AA3
A
60 66Right-handed alpha
Helix 4
AA4
A
94 113Right-handed alpha
Helix 5
AA5
A
116 123Right-handed alpha
Helix 6
AA6
A
129 141Right-handed alpha
Helix 7
AA7
A
145 151Right-handed alpha
Helix 8
AA8
A
154 161Right-handed alpha
Helix 9
AA9
A
161 174Right-handed alpha
Helix 10
AB1
A
183 187Right-handed 310
Helix 11
AB2
A
192 204Right-handed alpha
Helix 12
AB3
A
204 215Right-handed alpha
Helix 13
AB4
A
221 232Right-handed alpha
Helix 14
AB5
A
279 297Right-handed alpha
Helix 15
AB6
A
313 317Right-handed 310
Helix 16
AB7
A
325 335Right-handed alpha
Helix 17
AB8
B
24 27Right-handed 310
Helix 18
AB9
B
28 40Right-handed alpha
Helix 19
AC1
B
64 68Right-handed 310
Helix 20
AC2
B
71 75Right-handed 310
Helix 21
AC3
B
93 112Right-handed alpha
Helix 22
AC4
B
116 123Right-handed alpha
Helix 23
AC5
B
129 141Right-handed alpha
Helix 24
AC6
B
154 161Right-handed alpha
Helix 25
AC7
B
161 174Right-handed alpha
Helix 26
AC8
B
183 187Right-handed 310
Helix 27
AC9
B
192 202Right-handed alpha
Helix 28
AD1
B
204 214Right-handed alpha
Helix 29
AD2
B
221 232Right-handed alpha
Helix 30
AD3
B
276 301Right-handed alpha
Helix 31
AD4
B
312 317Right-handed alpha
Helix 32
AD5
B
326 334Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 6KS5. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 21first strand
Strand 2
A
272 273anti-parallel
Strand 3
A
261 264anti-parallel
Strand 4
A
236 240parallel
Strand 5
A
246 250anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
20 21first strand
Strand 2
B
271 273anti-parallel
Strand 3
B
261 264anti-parallel
Strand 4
B
236 240parallel
Strand 5
B
246 250anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il