Analysis of interatomic Contacts of Structural Units in PDB entry:
6KSD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6KSD entry

There is 1 chain in PDB entry 6KSD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 8GLU 328
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 13 helices in PDB entry 6KSD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 33Right-handed alpha
Helix 2
AA2
A
40 58Right-handed alpha
Helix 3
AA3
A
59 62Right-handed 310
Helix 4
AA4
A
97 112Right-handed alpha
Helix 5
AA5
A
134 137Right-handed 310
Helix 6
AA6
A
153 160Right-handed alpha
Helix 7
AA7
A
188 202Right-handed alpha
Helix 8
AA8
A
209 219Right-handed alpha
Helix 9
AA9
A
222 229Right-handed alpha
Helix 10
AB1
A
248 259Right-handed alpha
Helix 11
AB2
A
272 287Right-handed alpha
Helix 12
AB3
A
288 290Right-handed 310
Helix 13
AB4
A
303 311Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 6KSD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
82 84first strand
Strand 2
A
149 151anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 95first strand
Strand 2
A
320 324parallel
Strand 3
A
294 301anti-parallel
Strand 4
A
118 124anti-parallel
Strand 5
A
268 270anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
140 143first strand
Strand 2
A
127 132anti-parallel
Strand 3
A
179 186anti-parallel
Strand 4
A
232 241anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il