Analysis of interatomic Contacts of Structural Units in PDB entry:
6KSP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6KSP entry

There are 4 chains in PDB entry 6KSP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 2	ASN 838
B	SER 2	ASN 838
C	SER 2	ASN 838
D	SER 2	ASN 838

There are121 helices in PDB entry 6KSP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	32	Right-handed alpha
Helix 2	AA2	A	51	61	Right-handed alpha
Helix 3	AA3	A	78	87	Right-handed alpha
Helix 4	AA4	A	128	138	Right-handed alpha
Helix 5	AA5	A	158	160	Right-handed 310
Helix 6	AA6	A	161	168	Right-handed alpha
Helix 7	AA7	A	181	192	Right-handed alpha
Helix 8	AA8	A	193	204	Right-handed alpha
Helix 9	AA9	A	212	226	Right-handed alpha
Helix 10	AB1	A	243	254	Right-handed alpha
Helix 11	AB2	A	297	321	Right-handed alpha
Helix 12	AB3	A	343	351	Right-handed alpha
Helix 13	AB4	A	445	459	Right-handed alpha
Helix 14	AB5	A	485	489	Right-handed 310
Helix 15	AB6	A	503	510	Right-handed alpha
Helix 16	AB7	A	534	539	Right-handed alpha
Helix 17	AB8	A	542	548	Right-handed alpha
Helix 18	AB9	A	551	559	Right-handed alpha
Helix 19	AC1	A	610	616	Right-handed alpha
Helix 20	AC2	A	617	632	Right-handed alpha
Helix 21	AC3	A	652	656	Right-handed 310
Helix 22	AC4	A	665	674	Right-handed alpha
Helix 23	AC5	A	675	677	Right-handed 310
Helix 24	AC6	A	684	693	Right-handed alpha
Helix 25	AC7	A	694	698	Right-handed 310
Helix 26	AC8	A	707	714	Right-handed alpha
Helix 27	AC9	A	723	732	Right-handed alpha
Helix 28	AD1	A	760	774	Right-handed alpha
Helix 29	AD2	A	775	785	Right-handed alpha
Helix 30	AD3	A	811	838	Right-handed alpha
Helix 31	AD4	B	14	30	Right-handed alpha
Helix 32	AD5	B	52	63	Right-handed alpha
Helix 33	AD6	B	79	88	Right-handed alpha
Helix 34	AD7	B	128	141	Right-handed alpha
Helix 35	AD8	B	154	159	Right-handed 310
Helix 36	AD9	B	160	168	Right-handed alpha
Helix 37	AE1	B	180	192	Right-handed alpha
Helix 38	AE2	B	193	205	Right-handed alpha
Helix 39	AE3	B	212	226	Right-handed alpha
Helix 40	AE4	B	243	254	Right-handed alpha
Helix 41	AE5	B	297	319	Right-handed alpha
Helix 42	AE6	B	342	351	Right-handed alpha
Helix 43	AE7	B	445	455	Right-handed alpha
Helix 44	AE8	B	482	490	Right-handed alpha
Helix 45	AE9	B	503	508	Right-handed alpha
Helix 46	AF1	B	533	539	Right-handed 310
Helix 47	AF2	B	544	549	Right-handed alpha
Helix 48	AF3	B	551	558	Right-handed alpha
Helix 49	AF4	B	612	617	Right-handed alpha
Helix 50	AF5	B	618	629	Right-handed alpha
Helix 51	AF6	B	631	637	Right-handed 310
Helix 52	AF7	B	649	654	Right-handed alpha
Helix 53	AF8	B	665	674	Right-handed alpha
Helix 54	AF9	B	684	693	Right-handed alpha
Helix 55	AG1	B	694	698	Right-handed 310
Helix 56	AG2	B	704	711	Right-handed alpha
Helix 57	AG3	B	722	733	Right-handed alpha
Helix 58	AG4	B	760	774	Right-handed alpha
Helix 59	AG5	B	775	785	Right-handed alpha
Helix 60	AG6	B	811	816	Right-handed alpha
Helix 61	AG7	B	816	837	Right-handed alpha
Helix 62	AG8	C	13	27	Right-handed alpha
Helix 63	AG9	C	51	66	Right-handed alpha
Helix 64	AH1	C	78	89	Right-handed alpha
Helix 65	AH2	C	128	140	Right-handed alpha
Helix 66	AH3	C	158	167	Right-handed alpha
Helix 67	AH4	C	180	192	Right-handed alpha
Helix 68	AH5	C	193	204	Right-handed alpha
Helix 69	AH6	C	212	226	Right-handed alpha
Helix 70	AH7	C	243	251	Right-handed alpha
Helix 71	AH8	C	275	279	Right-handed 310
Helix 72	AH9	C	297	320	Right-handed alpha
Helix 73	AI1	C	341	350	Right-handed alpha
Helix 74	AI2	C	445	459	Right-handed alpha
Helix 75	AI3	C	485	489	Right-handed 310
Helix 76	AI4	C	503	510	Right-handed alpha
Helix 77	AI5	C	533	538	Right-handed alpha
Helix 78	AI6	C	542	544	Right-handed 310
Helix 79	AI7	C	545	552	Right-handed alpha
Helix 80	AI8	C	552	557	Right-handed alpha
Helix 81	AI9	C	558	560	Right-handed 310
Helix 82	AJ1	C	610	633	Right-handed alpha
Helix 83	AJ2	C	652	656	Right-handed 310
Helix 84	AJ3	C	665	675	Right-handed alpha
Helix 85	AJ4	C	684	693	Right-handed alpha
Helix 86	AJ5	C	694	698	Right-handed 310
Helix 87	AJ6	C	704	714	Right-handed alpha
Helix 88	AJ7	C	722	731	Right-handed alpha
Helix 89	AJ8	C	760	775	Right-handed alpha
Helix 90	AJ9	C	776	782	Right-handed alpha
Helix 91	AK1	C	813	838	Right-handed alpha
Helix 92	AK2	D	13	31	Right-handed alpha
Helix 93	AK3	D	51	66	Right-handed alpha
Helix 94	AK4	D	76	90	Right-handed alpha
Helix 95	AK5	D	128	140	Right-handed alpha
Helix 96	AK6	D	154	157	Right-handed 310
Helix 97	AK7	D	158	169	Right-handed alpha
Helix 98	AK8	D	180	190	Right-handed alpha
Helix 99	AK9	D	193	204	Right-handed alpha
Helix 100	AL1	D	212	226	Right-handed alpha
Helix 101	AL2	D	243	254	Right-handed alpha
Helix 102	AL3	D	292	296	Right-handed 310
Helix 103	AL4	D	297	320	Right-handed alpha
Helix 104	AL5	D	341	351	Right-handed alpha
Helix 105	AL6	D	445	457	Right-handed alpha
Helix 106	AL7	D	482	490	Right-handed alpha
Helix 107	AL8	D	503	510	Right-handed alpha
Helix 108	AL9	D	542	552	Right-handed alpha
Helix 109	AM1	D	552	558	Right-handed alpha
Helix 110	AM2	D	610	615	Right-handed alpha
Helix 111	AM3	D	615	631	Right-handed alpha
Helix 112	AM4	D	632	636	Right-handed 310
Helix 113	AM5	D	651	656	Right-handed 310
Helix 114	AM6	D	665	675	Right-handed alpha
Helix 115	AM7	D	682	693	Right-handed alpha
Helix 116	AM8	D	694	698	Right-handed 310
Helix 117	AM9	D	704	714	Right-handed alpha
Helix 118	AN1	D	722	732	Right-handed alpha
Helix 119	AN2	D	759	775	Right-handed alpha
Helix 120	AN3	D	775	785	Right-handed alpha
Helix 121	AN4	D	812	838	Right-handed alpha

There are 39 sheets in PDB entry 6KSP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	39	42	first strand
Strand 2	A	3	11	parallel
Strand 3	A	46	47	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	39	42	first strand
Strand 2	A	3	11	parallel
Strand 3	A	70	73	parallel
Strand 4	A	93	96	parallel
Strand 5	A	120	122	parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	176	177	first strand
Strand 2	A	148	150	parallel
Strand 3	A	207	210	parallel
Strand 4	A	234	238	parallel
Strand 5	A	257	261	parallel
Strand 6	A	373	379	anti-parallel
Strand 7	A	389	396	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	275	276	first strand
Strand 2	A	279	280	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	355	first strand
Strand 2	A	360	361	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	418	423	first strand
Strand 2	A	461	466	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	431	436	first strand
Strand 2	A	439	444	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	511	512	first strand
Strand 2	A	753	754	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	518	519	first strand
Strand 2	A	748	749	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	719	722	first strand
Strand 2	A	521	526	anti-parallel
Strand 3	A	738	741	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	661	662	first strand
Strand 2	A	701	702	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	10	first strand
Strand 2	B	44	46	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	93	95	first strand
Strand 2	B	120	122	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	173	176	first strand
Strand 2	B	146	149	parallel
Strand 3	B	206	209	parallel
Strand 4	B	234	237	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	259	262	first strand
Strand 2	B	373	378	anti-parallel
Strand 3	B	393	396	anti-parallel
Strand 4	B	400	403	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	419	423	first strand
Strand 2	B	462	466	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	431	436	first strand
Strand 2	B	439	444	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	515	517	first strand
Strand 2	B	750	751	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	10	first strand
Strand 2	C	41	46	parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	171	177	first strand
Strand 2	C	144	150	parallel
Strand 3	C	206	210	parallel
Strand 4	C	234	238	parallel
Strand 5	C	257	261	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	353	356	first strand
Strand 2	C	359	362	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	377	378	first strand
Strand 2	C	390	391	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	393	396	first strand
Strand 2	C	400	403	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	463	464	first strand
Strand 2	C	420	422	parallel
Strand 3	C	495	501	parallel
Strand 4	C	748	753	anti-parallel
Strand 5	C	512	519	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	431	434	first strand
Strand 2	C	442	444	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	720	721	first strand
Strand 2	C	522	526	anti-parallel
Strand 3	C	738	741	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	10	first strand
Strand 2	D	41	46	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	93	95	first strand
Strand 2	D	120	122	parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	173	177	first strand
Strand 2	D	146	150	parallel
Strand 3	D	206	210	parallel
Strand 4	D	234	237	parallel

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There are 3 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	258	263	first strand
Strand 2	D	373	380	anti-parallel
Strand 3	D	388	389	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	258	263	first strand
Strand 2	D	373	380	anti-parallel
Strand 3	D	393	396	anti-parallel
Strand 4	D	401	402	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	275	276	first strand
Strand 2	D	279	280	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	354	356	first strand
Strand 2	D	359	361	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	461	464	first strand
Strand 2	D	418	423	parallel
Strand 3	D	496	497	parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	431	432	first strand
Strand 2	D	443	444	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	435	436	first strand
Strand 2	D	439	440	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	511	512	first strand
Strand 2	D	753	754	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	517	518	first strand
Strand 2	D	749	750	anti-parallel

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There are 5 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	701	702	first strand
Strand 2	D	659	662	parallel
Strand 3	D	718	721	parallel
Strand 4	D	522	525	anti-parallel
Strand 5	D	739	741	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6KSP

Analysis of interatomic Contacts of Structural Units in PDB entry:
6KSP