Analysis of interatomic Contacts of Structural Units in PDB entry:
6KSQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6KSQ entry

There is 1 chain in PDB entry 6KSQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 294LYS 546
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 6KSQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
295 299Right-handed 310
Helix 2
AA2
A
300 304Right-handed 310
Helix 3
AA3
A
305 318Right-handed alpha
Helix 4
AA4
A
374 378Right-handed 310
Helix 5
AA5
A
379 383Right-handed 310
Helix 6
AA6
A
399 406Right-handed alpha
Helix 7
AA7
A
406 429Right-handed alpha
Helix 8
AA8
A
430 452Right-handed alpha
Helix 9
AA9
A
455 461Right-handed alpha
Helix 10
AB1
A
476 483Right-handed alpha
Helix 11
AB2
A
498 505Right-handed alpha
Helix 12
AB3
A
505 514Right-handed alpha
Helix 13
AB4
A
524 533Right-handed alpha
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There are 2 sheets in PDB entry 6KSQ. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
325 331first strand
Strand 2
A
337 343anti-parallel
Strand 3
A
386 391anti-parallel
Strand 4
A
362 365parallel
Strand 5
A
368 371anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
518 521first strand
Strand 2
A
490 495parallel
Strand 3
A
539 543parallel
Strand 4
A
535 536anti-parallel
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